PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP015683.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 386aa MW: 43625.8 Da PI: 6.7858

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP015683.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.9e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl PCP015683.1 14 KGPWSPEEDARLKAYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	36.3	1.3e-11	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd + + G++ W+ Ia+ ++ gRt++++k++w++ PCP015683.1 69 GGFSEEEDNTICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDARLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNTIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 RKQSNINQSP SDQSQDHQLK DAGKTHALSS SALERLQLHM QLQSLQNPFS FYNNPALWPK 180 LHPLQEKMIQ TLRSMNDNNP MMHHRALTSP LQPAQEQKGN INDVHEQLQL TSASILIQQE 240 FAKLCNHKNM DEPENPLNGM SYSDAPCRAF ISTSNQVDST IVAAKADGVE QLNSVGTHDH 300 HHQVNSSFQG EFGDVVNNKC FGLAAQQEDD QIAEFDCFKD INVSKDSLEW WANEFDAKSA 360 SSNSWDSISV LHSQGMFQDY ELGYNM

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDARLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNTIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
RKQSNINQSP SDQSQDHQLK DAGKTHALSS SALERLQLHM QLQSLQNPFS FYNNPALWPK  180
LHPLQEKMIQ TLRSMNDNNP MMHHRALTSP LQPAQEQKGN INDVHEQLQL TSASILIQQE  240
FAKLCNHKNM DEPENPLNGM SYSDAPCRAF ISTSNQVDST IVAAKADGVE QLNSVGTHDH  300
HHQVNSSFQG EFGDVVNNKC FGLAAQQEDD QIAEFDCFKD INVSKDSLEW WANEFDAKSA  360
SSNSWDSISV LHSQGMFQDY ELGYNM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	8e-97	MYB family protein