PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP015140.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 288aa    MW: 34885.3 Da    PI: 7.8116
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP015140.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix773e-2449131186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+ qe+++L+ +r e+++++ ++k++k lWe +s km+e+g +rs++qCk+kw+nl +ryk  +++e +     ++++p++++l+
  PCP015140.1  49 QWSVQETKDLLLIRAELDQTFMETKRNKLLWEVISTKMKEKGHHRSAEQCKCKWKNLVTRYKGFETMEPEA---MRQQFPFYNELQ 131
                  7********************************************************************95...55689*****97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MEHHPHHYQR HQQQHHQQLQ LQQQQQQQLQ QQHLSTVTVH VDTSDRFPQW SVQETKDLLL  60
IRAELDQTFM ETKRNKLLWE VISTKMKEKG HHRSAEQCKC KWKNLVTRYK GFETMEPEAM  120
RQQFPFYNEL QEIFAARMQR MLWAEESGAA SGSKKKTLSS DDEEDNEDSE AENKGSTGKN  180
KKKKMKMSNI GSSSASGNNV REILEEFMKQ QMQMEMQWRE EFQARENERR LQEMEWRQKM  240
EALENERIMM ETRWREREEQ RRMREEARAE KRDALITALL NKLRREDM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-54Trihelix family protein