PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP014299.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 447aa MW: 48127.7 Da PI: 7.1511

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP014299.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	97.8	9.4e-31	87	171	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s +++f+++ea PCP014299.1 87 RWPRQETLALLKIRSDMDAAFRDATLKGPLWEDVSRKLAELGYKRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSEMEA 171 8*******************************************************************866665..*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MQQQPAAGGV GGSQTHYGGG GEMSAAEAEA SAEQGQLVVE AASPISSRPP ASAAVNMDEL 60 MTLSGAAVAA EDALADRSGG GGSSGNRWPR QETLALLKIR SDMDAAFRDA TLKGPLWEDV 120 SRKLAELGYK RNAKKCKEKF ENVHKYYKRT KEGRAGRQDG KSYKFFSEME ALHGTAAATT 180 ANVSASSGVH AAHASPNPVS VGFGPVSNPM PISSFRMSPT IPVMPSQQQQ QATAIQIIPS 240 SQPTATPMDV NFSSNSSSTS PGTDDEDDDD DMEGEPSSRK RKRGSASTST GTSGGGSTRK 300 MMAFFEVLMK QVMQKQESMQ QRFLEVIEKR EQDRTIREEA WKRQEMARLT REHELMSQER 360 VISASRDAAI IAFLQKITGQ TIQLPPAVNV QVAPPPPVSP SVSVVAPLPQ TTPQPTTQTY 420 QTPQQQQPQR PQQVQQVRTS DAAGEYC

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MQQQPAAGGV GGSQTHYGGG GEMSAAEAEA SAEQGQLVVE AASPISSRPP ASAAVNMDEL  60
MTLSGAAVAA EDALADRSGG GGSSGNRWPR QETLALLKIR SDMDAAFRDA TLKGPLWEDV  120
SRKLAELGYK RNAKKCKEKF ENVHKYYKRT KEGRAGRQDG KSYKFFSEME ALHGTAAATT  180
ANVSASSGVH AAHASPNPVS VGFGPVSNPM PISSFRMSPT IPVMPSQQQQ QATAIQIIPS  240
SQPTATPMDV NFSSNSSSTS PGTDDEDDDD DMEGEPSSRK RKRGSASTST GTSGGGSTRK  300
MMAFFEVLMK QVMQKQESMQ QRFLEVIEKR EQDRTIREEA WKRQEMARLT REHELMSQER  360
VISASRDAAI IAFLQKITGQ TIQLPPAVNV QVAPPPPVSP SVSVVAPLPQ TTPQPTTQTY  420
QTPQQQQPQR PQQVQQVRTS DAAGEYC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	KRNAKKCKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	7e-44	Trihelix family protein