PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013665.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 345aa MW: 38085.4 Da PI: 8.0173

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013665.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++++G+g+W++++ g++R+ k+c++rw +yl PCP013665.1 14 KGPWTPEEDISLVSYIQEHGPGNWRAVPTNTGLHRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	48.3	2.3e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l PCP013665.1 67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MGRPPCCDKE GVKKGPWTPE EDISLVSYIQ EHGPGNWRAV PTNTGLHRCS KSCRLRWTNY 60 LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLRKKLIKLQ 120 AAGGGTEGLH SKDQGNSNSS SQAISRGQWE RRLQTDIHMA RQALRDALSP EKPLALSSDL 180 NPADGFSISN LKKPTLDQSS NSTYASSTEN ISRLLKGWMK NPPKKSARLT NLANNQTDYQ 240 HYSSSEGTTS VANTANSGNV ELSDTFESLF GFESSNSDLS PSTSPEASLF QGESKPDLTS 300 DQLPLSFLEK WLFDEGAAAA AAAALGKYHF FSDMVIPDHG NANIF

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MGRPPCCDKE GVKKGPWTPE EDISLVSYIQ EHGPGNWRAV PTNTGLHRCS KSCRLRWTNY  60
LRPGIKRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLRKKLIKLQ  120
AAGGGTEGLH SKDQGNSNSS SQAISRGQWE RRLQTDIHMA RQALRDALSP EKPLALSSDL  180
NPADGFSISN LKKPTLDQSS NSTYASSTEN ISRLLKGWMK NPPKKSARLT NLANNQTDYQ  240
HYSSSEGTTS VANTANSGNV ELSDTFESLF GFESSNSDLS PSTSPEASLF QGESKPDLTS  300
DQLPLSFLEK WLFDEGAAAA AAAALGKYHF FSDMVIPDHG NANIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-108	MYB family protein