PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013454.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 481aa MW: 53676.7 Da PI: 6.8334

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013454.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.3	1e-55	26	165	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrFhPtdee+++ yL kkv ++++e+ +i evd++k+ePwdLpk++k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++k PCP013454.1 26 LPPGFRFHPTDEEIITSYLIKKVINSSFEA-VAIGEVDLNKCEPWDLPKEAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFNKvkk 122 79***********************999.67***********99999*************************************9754 PP NAM 96 kgel............vglkktLvfykgrapkgektdWvmheyrl 128 + + vg+kktLvfykgrapkgekt+Wvmheyrl PCP013454.1 123 Q--QqqggkgagggclVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 165 1..2467888888999*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MDPSMEAQTE TGMVVNRGIS DELKGLPPGF RFHPTDEEII TSYLIKKVIN SSFEAVAIGE 60 VDLNKCEPWD LPKEAKMGEK EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIFNKV 120 KKQQQQGGKG AGGGCLVGMK KTLVFYKGRA PKGEKTNWVM HEYRLDGKIP LYNNLSKAAK 180 DEWVVCRVFH KNMGLKRTLT PTRMNSFGNI GDHDLLDCSS LPPLMDPTLN TSNIMTNKHS 240 SCYGDNDFKP DSIITAPPPS DYHGINTNSY LNYFSLGGGG GGVQGLKQSC NFQLQPNNNY 300 NSYQASSLSN PSNMLYPPPL HHNHQHHHQF QNPSSFPNFQ PNQMMSDSDY FQQGMMRGTQ 360 GQGSVFQTST ITSSDRDDDD QAILKEIAAA NNNNKRKNNN ETSSSGLRGG GLDRHCKVEQ 420 FSSNQSMFSL SQDTGLSTDM NTTEISSSFI SKQELGSTNN SSYDQDPSVV PLSDIEGLWD 480 F

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MDPSMEAQTE TGMVVNRGIS DELKGLPPGF RFHPTDEEII TSYLIKKVIN SSFEAVAIGE  60
VDLNKCEPWD LPKEAKMGEK EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIFNKV  120
KKQQQQGGKG AGGGCLVGMK KTLVFYKGRA PKGEKTNWVM HEYRLDGKIP LYNNLSKAAK  180
DEWVVCRVFH KNMGLKRTLT PTRMNSFGNI GDHDLLDCSS LPPLMDPTLN TSNIMTNKHS  240
SCYGDNDFKP DSIITAPPPS DYHGINTNSY LNYFSLGGGG GGVQGLKQSC NFQLQPNNNY  300
NSYQASSLSN PSNMLYPPPL HHNHQHHHQF QNPSSFPNFQ PNQMMSDSDY FQQGMMRGTQ  360
GQGSVFQTST ITSSDRDDDD QAILKEIAAA NNNNKRKNNN ETSSSGLRGG GLDRHCKVEQ  420
FSSNQSMFSL SQDTGLSTDM NTTEISSSFI SKQELGSTNN SSYDQDPSVV PLSDIEGLWD  480
F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	134	GGKGAGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-102	NAC family protein