PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP013308.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family BBR-BPC
Protein Properties Length: 311aa    MW: 35011.5 Da    PI: 10.0064
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP013308.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind354.42.4e-10813111301
    GAGA_bind   1 mdddgsre..rnkg.yye...............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdn 79 
                  mdd  ++e  r+k  yy+               ++ ++l   +++++ms+iaerda+irern+al+ek++a+a rd+a+ qrd+ala+r+ a++erdn
  PCP013308.1   1 MDDGRQHEngRHKMdYYRggtappwnmmgqqqaKEpNALV--MNKKIMSIIAERDAAIRERNAALAEKNEALAGRDEALRQRDEALAQRDSAMMERDN 96 
                  6776665568999889999999999999987653346676..99****************************************************** PP

    GAGA_bind  80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksekskk 176
                  +++al  ++n+   + p g ++ +g+k ++   + +   l+d  + +++++++ea+p++   +e  +++++k   rak++k+++a+ + kk +e+ ++
  PCP013308.1  97 AYAALHSRDNA--VNFPLGGGAPRGAKRMHRPSN-HSVTLADAHYSTKDMHITEAYPVSVISTEDVKSRQTK---RAKENKASRARqSRKKVGEDLNR 188
                  *******9998..667889999********8777.889********************99888888888777...55555555554244455667777 PP

    GAGA_bind 177 kvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
                  + ++++   + ++e++  dl+ln v++Des++PvPvCsCtG++rqCYkWGnGGWqS+CCtt +S+yPLP+++++r+aR++grKmS+++f++lL++Laa
  PCP013308.1 189 QASSDG--IKYRSEWDAHDLGLNLVTFDESAMPVPVCSCTGIPRQCYKWGNGGWQSSCCTTHMSMYPLPQMPNKRHARMGGRKMSGNVFTRLLSRLAA 284
                  766666..569*************************************************************************************** PP

    GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
                  +G+dls p+DLk++W +HGtn+++ti+
  PCP013308.1 285 DGHDLSIPLDLKEYWSRHGTNRYITIK 311
                  **************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MDDGRQHENG RHKMDYYRGG TAPPWNMMGQ QQAKEPNALV MNKKIMSIIA ERDAAIRERN  60
AALAEKNEAL AGRDEALRQR DEALAQRDSA MMERDNAYAA LHSRDNAVNF PLGGGAPRGA  120
KRMHRPSNHS VTLADAHYST KDMHITEAYP VSVISTEDVK SRQTKRAKEN KASRARQSRK  180
KVGEDLNRQA SSDGIKYRSE WDAHDLGLNL VTFDESAMPV PVCSCTGIPR QCYKWGNGGW  240
QSSCCTTHMS MYPLPQMPNK RHARMGGRKM SGNVFTRLLS RLAADGHDLS IPLDLKEYWS  300
RHGTNRYITI K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.11e-126BBR-BPC family protein