PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013227.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 542aa MW: 59742.6 Da PI: 8.8148

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013227.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.8	9.1e-09	404	427	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++Cr f+r GtC+yGd+C+F H+ PCP013227.1 404 VRICRSFFRWGTCSYGDKCRFRHV 427 799******************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MASSSLGTLN AKITNLNFSR ARVGVLQSYG IITWTGRKPQ LYSCLSISRQ SEKVLHARSV 60 PSLEILSAKS LEEVSEESGD SGLTNQLIQN FDEVQSLLTA ICDTTTVAEV KLKIGGFRLN 120 VVRKLTEKIS TPPPPSPAPV STSENAKALD WNGAVPTQSV AITRQESSSR SIQTLLDRAA 180 DDGLVLIHSP RVGLFRRSRT IKGKRAPPSC KEKQIVKEGQ VICYIEQLGG ELPIESDVAG 240 EVIRILREDG DPVGYGDALV ALECNLVKLH TNMSTPLPTP QFFAQYLESG DSGRQMKHQI 300 PTEEKEIKAQ SDINSQAFKK PRTSEAVSNS NAASGQNKML PSYYKTQLCR KFQMGCCFSG 360 QRCSFAHGTS DLRRTLRDAQ GMETEKGNLV RRTWNGDHGS SNGVRICRSF FRWGTCSYGD 420 KCRFRHVSPE NIRDSSFISI STAGGSAQFD CKKSMELRKL CGYTTPECGS VQANSLTTYT 480 RGNNASNRRM GIATAYKQGQ STQCNLEWNE LEKLSRIYAD WIEDMPLLHG SSNKVECYSS 540 LV

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MASSSLGTLN AKITNLNFSR ARVGVLQSYG IITWTGRKPQ LYSCLSISRQ SEKVLHARSV  60
PSLEILSAKS LEEVSEESGD SGLTNQLIQN FDEVQSLLTA ICDTTTVAEV KLKIGGFRLN  120
VVRKLTEKIS TPPPPSPAPV STSENAKALD WNGAVPTQSV AITRQESSSR SIQTLLDRAA  180
DDGLVLIHSP RVGLFRRSRT IKGKRAPPSC KEKQIVKEGQ VICYIEQLGG ELPIESDVAG  240
EVIRILREDG DPVGYGDALV ALECNLVKLH TNMSTPLPTP QFFAQYLESG DSGRQMKHQI  300
PTEEKEIKAQ SDINSQAFKK PRTSEAVSNS NAASGQNKML PSYYKTQLCR KFQMGCCFSG  360
QRCSFAHGTS DLRRTLRDAQ GMETEKGNLV RRTWNGDHGS SNGVRICRSF FRWGTCSYGD  420
KCRFRHVSPE NIRDSSFISI STAGGSAQFD CKKSMELRKL CGYTTPECGS VQANSLTTYT  480
RGNNASNRRM GIATAYKQGQ STQCNLEWNE LEKLSRIYAD WIEDMPLLHG SSNKVECYSS  540
LV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	3e-11	C3H family protein