PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013208.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-X1

Protein Properties

Length: 867aa MW: 96813.4 Da PI: 8.4277

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013208.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	21.1	6.8e-07	231	249	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+++CH GpC pC+ PCP013208.1 231 CGIHRCSEICHQGPCSPCR 249 ******************6 PP
2	zf-NF-X1	18.3	4.9e-06	285	303	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+HkC k CH+G+C+pCp PCP013208.1 285 CGQHKCTKGCHLGECGPCP 303 ******************9 PP
3	zf-NF-X1	18.1	6e-06	392	411	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ C+ G+CppC++ PCP013208.1 392 CGRHACKRRCCDGDCPPCSE 411 ******************85 PP
4	zf-NF-X1	16.1	2.5e-05	413	437	1	19
zf-NF-X1 1 CG......kHkCqklCHeGpCppCp 19 CG +HkC ++CH+G C pCp PCP013208.1 413 CGrklrcrNHKCPSPCHRGACAPCP 437 777777779***************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 867 aa Download sequence
MPSNHSDSDT DSDQSQSGSG PVRHSDLSDS IFRTYLEFTG KSTATTADLS KIQSFLTSSS 60 SGALSCLICL ERIRPADPSW SCTSVCFSVF HLICIQSWAR QASDLSALRA STRLPISAQK 120 AAEVSVWNCP KCRIEYPHSQ IPKNYYCFCG KLENPPSDDP WVLPHSCGEV CNRPLKHGCG 180 HHCLLLCHPG PCPSCPKLVE ARCFCGSVKD VRRCGFKHFS CNNACKKVLA CGIHRCSEIC 240 HQGPCSPCRV RGVYRCQCGK KEEEKECCER LDFRCEEPCE KVLGCGQHKC TKGCHLGECG 300 PCPSQGKRTC PCGKRMHEGL SCKASVPLCG STCDKMLSCG YHRCPERCHR GECIETCRTV 360 VIKSCRCGSL KKEVPCHQDL ACERKCQRLR DCGRHACKRR CCDGDCPPCS EICGRKLRCR 420 NHKCPSPCHR GACAPCPVMV TIICACGQTH FEVQVPCGTE MDQKPPRCRK PCPITPLCRH 480 GPNSKPHKCH YGACHPCRLL CEEEYPCGHK CKLRCHGPKP PPNLEFTLKP KKKKSFHQSE 540 STPGSPCPPC PELVWRSCVG QHIGADKMMV CSDNTLFSCE NLCGNPLPCG NHFCTKTCHP 600 LKNQTVPSVR QARSEPCEKC QLPCKKEREP ACPHPCPLPC HPGDCPPCKV LVKRSCHCGS 660 MVHVFECIYF NSLSEKEQMT ARSCKGPCHR KLPYCTHLCP EICHPGQCSS PEKCSKKVTI 720 RCGCQSLKKE WLCHNVQAAY RDAGSDPKDA SKNQFGLGLI PCNSDCKSKQ KVNDSELQLR 780 RPKSVEVKES DNDRQGPKRK KRRERVQQVT QTSTLQKIIS NVKRCLLVFT LLVVLAAVSY 840 YGYMGLLRLN DWMNEVEEYR QRRYPRI

Sequence ? help Back to Top

Protein Sequence Length: 867 aa Download sequence

MPSNHSDSDT DSDQSQSGSG PVRHSDLSDS IFRTYLEFTG KSTATTADLS KIQSFLTSSS  60
SGALSCLICL ERIRPADPSW SCTSVCFSVF HLICIQSWAR QASDLSALRA STRLPISAQK  120
AAEVSVWNCP KCRIEYPHSQ IPKNYYCFCG KLENPPSDDP WVLPHSCGEV CNRPLKHGCG  180
HHCLLLCHPG PCPSCPKLVE ARCFCGSVKD VRRCGFKHFS CNNACKKVLA CGIHRCSEIC  240
HQGPCSPCRV RGVYRCQCGK KEEEKECCER LDFRCEEPCE KVLGCGQHKC TKGCHLGECG  300
PCPSQGKRTC PCGKRMHEGL SCKASVPLCG STCDKMLSCG YHRCPERCHR GECIETCRTV  360
VIKSCRCGSL KKEVPCHQDL ACERKCQRLR DCGRHACKRR CCDGDCPPCS EICGRKLRCR  420
NHKCPSPCHR GACAPCPVMV TIICACGQTH FEVQVPCGTE MDQKPPRCRK PCPITPLCRH  480
GPNSKPHKCH YGACHPCRLL CEEEYPCGHK CKLRCHGPKP PPNLEFTLKP KKKKSFHQSE  540
STPGSPCPPC PELVWRSCVG QHIGADKMMV CSDNTLFSCE NLCGNPLPCG NHFCTKTCHP  600
LKNQTVPSVR QARSEPCEKC QLPCKKEREP ACPHPCPLPC HPGDCPPCKV LVKRSCHCGS  660
MVHVFECIYF NSLSEKEQMT ARSCKGPCHR KLPYCTHLCP EICHPGQCSS PEKCSKKVTI  720
RCGCQSLKKE WLCHNVQAAY RDAGSDPKDA SKNQFGLGLI PCNSDCKSKQ KVNDSELQLR  780
RPKSVEVKES DNDRQGPKRK KRRERVQQVT QTSTLQKIIS NVKRCLLVFT LLVVLAAVSY  840
YGYMGLLRLN DWMNEVEEYR QRRYPRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	797	803	PKRKKRR
2	799	805	RKKRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein