PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013191.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 177aa MW: 19336.8 Da PI: 7.94

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013191.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.6	6.8e-41	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+l+r+C++ C++apyf ++++kkfa vhk+FGasnv+k+l+++pe++red+++sl+yeAear+rdPvyG++g i+ lq+++ ql+++la+++ PCP013191.1 12 SCAACKTLKRRCSPTCIFAPYFHSDDAKKFAQVHKVFGASNVSKILTEVPEDQREDTVNSLAYEAEARLRDPVYGCIGAISMLQRKMIQLQHDLAVAR 109 6**********************************************************************************************998 PP DUF260 99 ee 100 ++ PCP013191.1 110 AR 111 75 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence
MKGSHEPRSS SSCAACKTLK RRCSPTCIFA PYFHSDDAKK FAQVHKVFGA SNVSKILTEV 60 PEDQREDTVN SLAYEAEARL RDPVYGCIGA ISMLQRKMIQ LQHDLAVARA RLACYAPKNS 120 PSLSSCSSSC CAMLDEATFS GFPAWSGLNS NNFSQNSSDL ISQHGQASDF SYSSYIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	1e-64	LBD family protein