PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP013104.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 508aa MW: 56019.6 Da PI: 7.6119

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP013104.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.5	5.1e-40	161	236	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gC++dl+ k+yh+rh+vC++hsk++vv+v+g+eqrfCqqCsrfh l efD+ krsCrrrLa+hn rrrk+ PCP013104.1 161 TCQVHGCNMDLTFSKDYHKRHRVCDAHSKTAVVIVNGIEQRFCQQCSRFHLLAEFDDVKRSCRRRLAGHNLRRRKP 236 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MESWSFGSEE KGFLFPEEID IPTDAFSRNT RKAFLDLDDK TCFNFGKESV DSVGFMDLGF 60 PDINQGVEIL NGVVCNDSSY NSVASPSCLI SSNSSFGEGE SGSKFSGPVT ECSSMDSSMI 120 ALKLGSLADS RGGQNIQHSI STERSKKAGN GPRSLYHPAP TCQVHGCNMD LTFSKDYHKR 180 HRVCDAHSKT AVVIVNGIEQ RFCQQCSRFH LLAEFDDVKR SCRRRLAGHN LRRRKPLLDT 240 LDCKPHKLIR TCQGNGYMGS SFPKGTPSVF SDKLPDGCIL YPEYEQANQY GNVKSEDGST 300 YGQSVTPIPN RQFIPKSFHH LPGLGKQFAP GIPSSGNEYS IFDTASNTQK AFGASNSSCA 360 LSLLSAQPHN LSSHSAGVQV PNPLINQRAY HCFGQLNEKT SRVNSMENCG RNRTYPFSKK 420 SMGANHMESA NISDSSHAAD FQLHTDRAYH VSDCLSAKYC VSPECGTTFD LLQLSSHLQR 480 VEHERNFLQV KQENGKFYCF PTGMQATM

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MESWSFGSEE KGFLFPEEID IPTDAFSRNT RKAFLDLDDK TCFNFGKESV DSVGFMDLGF  60
PDINQGVEIL NGVVCNDSSY NSVASPSCLI SSNSSFGEGE SGSKFSGPVT ECSSMDSSMI  120
ALKLGSLADS RGGQNIQHSI STERSKKAGN GPRSLYHPAP TCQVHGCNMD LTFSKDYHKR  180
HRVCDAHSKT AVVIVNGIEQ RFCQQCSRFH LLAEFDDVKR SCRRRLAGHN LRRRKPLLDT  240
LDCKPHKLIR TCQGNGYMGS SFPKGTPSVF SDKLPDGCIL YPEYEQANQY GNVKSEDGST  300
YGQSVTPIPN RQFIPKSFHH LPGLGKQFAP GIPSSGNEYS IFDTASNTQK AFGASNSSCA  360
LSLLSAQPHN LSSHSAGVQV PNPLINQRAY HCFGQLNEKT SRVNSMENCG RNRTYPFSKK  420
SMGANHMESA NISDSSHAAD FQLHTDRAYH VSDCLSAKYC VSPECGTTFD LLQLSSHLQR  480
VEHERNFLQV KQENGKFYCF PTGMQATM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	9e-37	SBP family protein