PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP012158.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 578aa    MW: 64342.1 Da    PI: 4.9032
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP012158.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.54.3e-1372095782374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lL+ecA a+s+g+ e+a+++++ l++++s +gdp+qR+aay++e+Laarla+s++ lyk+l+++e +   ss +laa+++++ev+P++kf++++aN
  PCP012158.1 209 KQLLFECAGALSEGNIEEASTMINVLRQMVSIQGDPTQRIAAYMVEGLAARLASSGKFLYKSLKCKEPP---SSYRLAAMQILFEVCPCFKFGFMAAN 303
                  589*****************************************************************9...9************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   aI ea + e+rvHiiDfd++qG Q+++L+q+L+s p++pp+l++Tgv++pe++  +   l+ +g+rL+k+Ae l+vpfef++ va+r++ ++ ++L 
  PCP012158.1 304 GAIIEACKDEKRVHIIDFDVNQGNQYITLIQTLSSLPGKPPHLKLTGVDDPETVqrHVGGLNIIGQRLEKLAEVLKVPFEFHA-VASRTSIVNASMLG 400
                  ****************************************************99888999***********************.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++pgEal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++F  rf+ea +yysa++dsl+a lpres++r++vEr++l+r+
  PCP012158.1 401 CRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLRPKLVTVVEQDVNTNTTPFIPRFVEAYNYYSAVYDSLDAALPRESQDRMNVERQCLARD 498
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ivn+vaceg+er+er e ++kWr+r+++aGF++ p+s++++++++ l r+++ + y+v+ee g+l +gW+d++L+++SaWr
  PCP012158.1 499 IVNIVACEGEERIERYEVAGKWRARMTMAGFTSCPMSTSVTDSIRDLSRQYSHR-YKVKEEAGALHFGWEDKSLIVASAWR 578
                  ****************************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    
MSLVRPAELS TTSYRNRKLY SLNGSNDGSS LSTQIFGADE HKAVYVNDSY SSETYEKYFL  60
DSPMEEVTHP SSYGVSGSST NPQGASSYQL TAGSVSSLNT QNPYITSLMS NFESDYLESQ  120
SPDADSFDED KMRLKLQELE RALLDDNDDE DDGEINCSSR SMEVDGEWID PIHSELLHDS  180
PKESSSSDSN ASSISSKKEI SHASPRTPKQ LLFECAGALS EGNIEEASTM INVLRQMVSI  240
QGDPTQRIAA YMVEGLAARL ASSGKFLYKS LKCKEPPSSY RLAAMQILFE VCPCFKFGFM  300
AANGAIIEAC KDEKRVHIID FDVNQGNQYI TLIQTLSSLP GKPPHLKLTG VDDPETVQRH  360
VGGLNIIGQR LEKLAEVLKV PFEFHAVASR TSIVNASMLG CRPGEALVVN FAFQLHHMPD  420
ESVSTVNQRD QLLRMVKSLR PKLVTVVEQD VNTNTTPFIP RFVEAYNYYS AVYDSLDAAL  480
PRESQDRMNV ERQCLARDIV NIVACEGEER IERYEVAGKW RARMTMAGFT SCPMSTSVTD  540
SIRDLSRQYS HRYKVKEEAG ALHFGWEDKS LIVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0GRAS family protein