PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP010977.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 348aa    MW: 39414 Da    PI: 6.5256
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP010977.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF391e-123072749
                 HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                  +++v+fskRr g++ KA+E +   da++av+++s+ g+ y +
  PCP010977.1 30 NRKYVSFSKRRYGLFSKASEFCLKFDAQIAVLVLSPAGRPYSF 72
                 5789**********************************98877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MSRRRRAGQV IKLESEEGVD PRVVQQKELN RKYVSFSKRR YGLFSKASEF CLKFDAQIAV  60
LVLSPAGRPY SFGHSSVDAV LNRYFKIAQA PSTSRFTEDN QEEQRDKIQV LRKQLESHKK  120
RKREEEIAEK NKVAKVKESV EKELQTCKTV EELVAFKQKY LVLHENINKR FKKSQSPVSK  180
RQCISRDIVL EDNNAQHVSI RPILISKDTL PNTTLTTVGD DHDVGNGNSN DNGNGKGSFS  240
WNAEDLENFL LRQDVEDIGG VVEETGYAAM LNYFIGEDGN DPNGAVDVSP AEHVVFPPAL  300
KAPPFDPVGS SDFTQHNISD DAANRYYGYL EDIINNSYFH LDTSFNFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-17M-type_MADS family protein