PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP010710.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 409aa MW: 45395.3 Da PI: 6.3455

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP010710.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.8	4.1e-08	351	393	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ r+RR+ri +++ L++l+P K++ a++L +A +Y+k L PCP010710.1 351 AAARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 393 567*****************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MDGLDWDGSH ITNTSTLLWS NHQVHDLEES LLLSNSSSSA FIPIQELPKV QTSHVIMNSN 60 TERSSNIGTH QIAHQKNRCG LDSVHDMPTL RADELCQSPL NINGPYNLMS SLSTSTFMAA 120 DHYGNIGKHV QPQANFHGLQ DQHVKAKPAT TCSVESLDCL LSGTNSNTDT SVEDDDGISM 180 LFSDCRRNLW NFRAGNNSAN SSGDSENNET VVSQSSSDLY VQIQGKPNST KRSHDQSEPK 240 LHGANYSHFG LLQKDYSSTS EGDFRLISEN PPKPKKLRSD NKRPSSSNIS FRQPCSSVPT 300 SSIEEPDPEA IAQMKEMIFR AAAFRPVNLE LEMVERPKRK NVKISSDPQT AAARQRRERI 360 SERIRVLQRL VPGGSKMDTA SMLDEAANYL KFLRSQIPND DVLDDHGVM

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MDGLDWDGSH ITNTSTLLWS NHQVHDLEES LLLSNSSSSA FIPIQELPKV QTSHVIMNSN  60
TERSSNIGTH QIAHQKNRCG LDSVHDMPTL RADELCQSPL NINGPYNLMS SLSTSTFMAA  120
DHYGNIGKHV QPQANFHGLQ DQHVKAKPAT TCSVESLDCL LSGTNSNTDT SVEDDDGISM  180
LFSDCRRNLW NFRAGNNSAN SSGDSENNET VVSQSSSDLY VQIQGKPNST KRSHDQSEPK  240
LHGANYSHFG LLQKDYSSTS EGDFRLISEN PPKPKKLRSD NKRPSSSNIS FRQPCSSVPT  300
SSIEEPDPEA IAQMKEMIFR AAAFRPVNLE LEMVERPKRK NVKISSDPQT AAARQRRERI  360
SERIRVLQRL VPGGSKMDTA SMLDEAANYL KFLRSQIPND DVLDDHGVM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	354	359	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-60	bHLH family protein