PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009973.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 584aa MW: 64069.2 Da PI: 10.8026

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009973.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.8	3.3e-37	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaC++lrr+C +C lapyfp e+ kfa vh++FGasnv+k+++ ++e++reda++s+vyeA ar+rdPvyG+++ i++lq+ +e+l+++l+++k PCP009973.1 15 PCAACRMLRRRCDINCSLAPYFPIEEIDKFAGVHRVFGASNVIKMIQMVEETRREDAVKSIVYEATARIRDPVYGSTAAIFHLQKMIEELRSQLETIK 112 7*********************************************************************************************9998 PP DUF260 99 ee 100 ++ PCP009973.1 113 SQ 114 86 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MDARITPMHA RVHQPCAACR MLRRRCDINC SLAPYFPIEE IDKFAGVHRV FGASNVIKMI 60 QMVEETRRED AVKSIVYEAT ARIRDPVYGS TAAIFHLQKM IEELRSQLET IKSQVLESQQ 120 QRDQLLGILM NNVHSLDLFS DMHDPMFGES SKVQEDTVVW PNCLGFVLGR KSSKANLLRP 180 ISRANLDGPI VALVVLPRVL GTQHGVPQMS DSSSHLGRGV PYQPLHSHLL VFLQSLPNSG 240 RLGVGCLRAA KISMMKKLLT HLSSKKLRLM QRGKRLGAAT MPETLETSPS YLGFPKTRLS 300 LKYRLWHIGV VESSESEPEE RPQPHLALPG LKETLTRRPK LKPLRLPNPP LPLKLKRAGR 360 KKKPPAKGPP SPRLLLFHPE QRNSLSQAKP SKAKVEASAP AIGQSSTPTL STLSSVVVVT 420 PTSQFNPKTR EMMHYVDDDN NSVVHKEIKQ SSTTFGEPIV PKIPVVSEMT SPRASKATSR 480 ASRPASPRAN VVTKVPSSLV QASSLQQASG DGSGQSHRPV AHKATLPQPP KASGVTEIPI 540 PRPKKTNAAG ASFTSRHSPY IFSEAASGGA EVMPSLIAQT CQKF

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MDARITPMHA RVHQPCAACR MLRRRCDINC SLAPYFPIEE IDKFAGVHRV FGASNVIKMI  60
QMVEETRRED AVKSIVYEAT ARIRDPVYGS TAAIFHLQKM IEELRSQLET IKSQVLESQQ  120
QRDQLLGILM NNVHSLDLFS DMHDPMFGES SKVQEDTVVW PNCLGFVLGR KSSKANLLRP  180
ISRANLDGPI VALVVLPRVL GTQHGVPQMS DSSSHLGRGV PYQPLHSHLL VFLQSLPNSG  240
RLGVGCLRAA KISMMKKLLT HLSSKKLRLM QRGKRLGAAT MPETLETSPS YLGFPKTRLS  300
LKYRLWHIGV VESSESEPEE RPQPHLALPG LKETLTRRPK LKPLRLPNPP LPLKLKRAGR  360
KKKPPAKGPP SPRLLLFHPE QRNSLSQAKP SKAKVEASAP AIGQSSTPTL STLSSVVVVT  420
PTSQFNPKTR EMMHYVDDDN NSVVHKEIKQ SSTTFGEPIV PKIPVVSEMT SPRASKATSR  480
ASRPASPRAN VVTKVPSSLV QASSLQQASG DGSGQSHRPV AHKATLPQPP KASGVTEIPI  540
PRPKKTNAAG ASFTSRHSPY IFSEAASGGA EVMPSLIAQT CQKF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	7e-40	LBD family protein