PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009886.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

WOX

Protein Properties

Length: 382aa MW: 43367.3 Da PI: 7.9471

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009886.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.4	4.4e-22	89	148	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ PCP009886.1 89 SRWNPTPEQLRALEELYRRgTRTPSAEQIQHITAQLrkygKIEGKNVFYWFQNHKARERQ 148 7***************99************************************97 PP
2	Wus_type_Homeobox	115.5	2.5e-37	88	150	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ PCP009886.1 88 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLRKYGKIEGKNVFYWFQNHKARERQKR 150 79***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MWMMGYNDGG HGDFNMPDSF NGRKLRTLIP RQLPSVNNTS STITTPPCLN RSAIHGSHDF 60 LTQYHQLAAM AEQNKRSEFL NTPQVVVSSR WNPTPEQLRA LEELYRRGTR TPSAEQIQHI 120 TAQLRKYGKI EGKNVFYWFQ NHKARERQKR RRQMESSALS AEHDHQLQIS MTSTDNQKKE 180 ELLGASRTGF EVAETKNWAP STNCNTAATL VEESVSIQRA AKTAAAECRT DGWIQFDEEE 240 LQQRRNFVER NATWQMMQLS CPSHPHPHPP THLINTPPTC ASTTARSRAA ATVRRDQRLF 300 KSHDLSIFIA PYTSETGFNT VTEQDPGCEE SQTLQLFPLR SGHVNASANA NELSVNDKDH 360 TELSASFSAH PFPFFEFLPL KN

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MWMMGYNDGG HGDFNMPDSF NGRKLRTLIP RQLPSVNNTS STITTPPCLN RSAIHGSHDF  60
LTQYHQLAAM AEQNKRSEFL NTPQVVVSSR WNPTPEQLRA LEELYRRGTR TPSAEQIQHI  120
TAQLRKYGKI EGKNVFYWFQ NHKARERQKR RRQMESSALS AEHDHQLQIS MTSTDNQKKE  180
ELLGASRTGF EVAETKNWAP STNCNTAATL VEESVSIQRA AKTAAAECRT DGWIQFDEEE  240
LQQRRNFVER NATWQMMQLS CPSHPHPHPP THLINTPPTC ASTTARSRAA ATVRRDQRLF  300
KSHDLSIFIA PYTSETGFNT VTEQDPGCEE SQTLQLFPLR SGHVNASANA NELSVNDKDH  360
TELSASFSAH PFPFFEFLPL KN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	6e-61	WOX family protein