PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP009728.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 298aa    MW: 33197.1 Da    PI: 6.0275
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP009728.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.1e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll++++  +G g+W++ a+  g++Rt+k+c++rw++yl
      PCP009728.1 15 RGPWTLEEDNLLIHYIMNHGEGHWNSLAKLAGLKRTGKSCRLRWLNYL 62
                     89********************************************97 PP
2Myb_DNA-binding50.93.5e-1668111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++ ++++++++G++ W++Ia++++ gRt++++k++w++
      PCP009728.1  68 RGNLTPQEQLVILELHAKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 111
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MAAPTTPNEE NEFRRGPWTL EEDNLLIHYI MNHGEGHWNS LAKLAGLKRT GKSCRLRWLN  60
YLKPDIKRGN LTPQEQLVIL ELHAKWGNRW SKIAQHLPGR TDNEIKNYWR TRVQKQARQL  120
NIESNSEQFL DAVRGFWVPT LLQKMEQSSS SCSSTLSTSQ NSAYPCLSPN HAAPSVPLST  180
SPPSNATNML DNYHISGNAN LATLPSNILS ADSFIPHVPQ MAEPSTSLPP ASYRLGYNSL  240
TPDGSHYVDS SSYDVEGLSL DPVSAMGNLG NSLFDCQMGG DDWMLDNLTD NLWNMDGP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-84MYB family protein