PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009290.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 370aa MW: 41533.1 Da PI: 5.2252

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009290.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++q+G g+W+++++ g+ R++k+c++rw +yl PCP009290.1 14 KGLWSPEEDEKLFNYITQFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	42.9	1.1e-13	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l++ +++ G++ W+ Ia+ ++ gRt++++k++w++ PCP009290.1 67 RGMFSQQEEDLILSLHEVIGNR-WAQIAAQLP-GRTDNEIKNFWNS 110 788*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MGRNSCCLKQ KLRKGLWSPE EDEKLFNYIT QFGVGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQQEEDLILS LHEVIGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG 120 IDPTTHKPLT EEEQKEANNI DCSDLNESLP MPELPTMPIT MASQGPTFLL NDSNYYDGNG 180 GVLNNPQASR AFDSLSYFEF QPGFESSAYN SDLVAAQYHH TNIRPYESSS NFGFTSMPSL 240 ANSDHGSMSG TDFSDNSASR LGSFFMNEVK ESSSNSSNVG SYTAGCHMSS NNVIENAAFP 300 WETDNKLDSL FQFHFNGIKS EEIIKPNSSW QQQGQLVHHH AQNSVEFSSY PLTSLSEDLT 360 GANFDVFQNI

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MGRNSCCLKQ KLRKGLWSPE EDEKLFNYIT QFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQQEEDLILS LHEVIGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPTTHKPLT EEEQKEANNI DCSDLNESLP MPELPTMPIT MASQGPTFLL NDSNYYDGNG  180
GVLNNPQASR AFDSLSYFEF QPGFESSAYN SDLVAAQYHH TNIRPYESSS NFGFTSMPSL  240
ANSDHGSMSG TDFSDNSASR LGSFFMNEVK ESSSNSSNVG SYTAGCHMSS NNVIENAAFP  300
WETDNKLDSL FQFHFNGIKS EEIIKPNSSW QQQGQLVHHH AQNSVEFSSY PLTSLSEDLT  360
GANFDVFQNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	6e-83	MYB family protein