PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009135.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Nin-like

Protein Properties

Length: 1257aa MW: 140241 Da PI: 7.2137

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009135.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.3	3.5e-29	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ PCP009135.1 598 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 649 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1257 aa Download sequence
MDYHFSPKDK GNDHWASARA QVENLASFDD GTRNPISEDM FNNISELMNF DTYAGWCSPA 60 ATDQIAASLG MPSCPSVTYT PLDALNLVEH NGEQLPVTSG AGTFNVGGSF NCGDKIVFEH 120 MGTPQYGVST DSNDANDSIV KLNNGSFQQN NVMGMEDYLI YRPPGLSLNE KMLKALSMFK 180 ETSGGGILAQ LWVPMKHGDQ YLLSTCEQPY LLDHILTGYR EVSRMFTFSA EEKQGSILGL 240 PGRVFVSKTP EWTSNVSFYN KTEYLRVDHA ANHQVRGSIA LPIFDFDLES SCCAVLELVS 300 TKEKPNFDTE MEIVCSALQA VNLKTNAPLR LLPQCLSKNQ RAALTEINDV LRAICHAHLL 360 PLAMTWIPCC YSEGDDDGIK RVRVKGGFTN SDEKCILCIE ETACYVNDRR MQGFVHACAE 420 HHLEEGEGIA GKALQSNHPF FINDVKAYDI YKYPLVHHAR KYGLNAAVAI RLRSTYTGDD 480 DYILEFFLPV NVKGSTEQQL LLNNLSGTMQ RICKSLRTVS DAELVGLGGA NTGFQKETSP 540 NIPQRNFQTT LSDSEMNSAE NVTFNVFNQR NGGIERVNPP KQAPSGSIRQ AEKKRSTAEK 600 NVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL 660 DSVQGVEGGL KYDPTTGGFV ATGSIIQEVD APKNLLFPAK NLLIENSEPV AQHPISMPSM 720 SYNNGESLTV KLEEDGNCVP TSHEKEVKTQ NIPFMPQGDS KPIAMDFGSC DPTNHGITPD 780 LKGSYLAKEV NKWGHIQNSL RLDNSDCHFV SQNSSFLVPA DEMDMGVHGD DGIVEYNQHS 840 SSSLTDSSND FGSTMQGYSS STQSFEEQKH PQVETSTAEN GSKIIVKATY KEDTIRFKFE 900 PSLGCLQLYE EVAKRLKLQN GTFQLKYLDD EEEWVMLVSD ADLQECLEIL DDIGKRCAKF 960 MVRDIPSGVG SSGSSNFLGF HIGPGAYNDN EFSCSLTMPR YDDRYGNTRL YVGRLSSRTR 1020 SRDLERLFNR YGRVRDVDMK REFAFVDFSD PRDADDARYS LDGREFDGSR LIVEFAKGTD 1080 SFFFVTLEKA PRGLREYLGR GPTPGSGRCF NCGIDGHWAR DCKAGDWKNK CYRCGERGHI 1140 ERQCKNSPKE LSRGRSRSPV GSRSRRGRSR SPSYSRSRSY SRSRSPARRG RSEDRYDRSR 1200 SPSYRKSPLP SKGGRKRSLT PDVDSPRGRR SPSPRNGRME MEKEGSDYSP REVSKPF

Sequence ? help Back to Top

Protein Sequence Length: 1257 aa Download sequence

MDYHFSPKDK GNDHWASARA QVENLASFDD GTRNPISEDM FNNISELMNF DTYAGWCSPA  60
ATDQIAASLG MPSCPSVTYT PLDALNLVEH NGEQLPVTSG AGTFNVGGSF NCGDKIVFEH  120
MGTPQYGVST DSNDANDSIV KLNNGSFQQN NVMGMEDYLI YRPPGLSLNE KMLKALSMFK  180
ETSGGGILAQ LWVPMKHGDQ YLLSTCEQPY LLDHILTGYR EVSRMFTFSA EEKQGSILGL  240
PGRVFVSKTP EWTSNVSFYN KTEYLRVDHA ANHQVRGSIA LPIFDFDLES SCCAVLELVS  300
TKEKPNFDTE MEIVCSALQA VNLKTNAPLR LLPQCLSKNQ RAALTEINDV LRAICHAHLL  360
PLAMTWIPCC YSEGDDDGIK RVRVKGGFTN SDEKCILCIE ETACYVNDRR MQGFVHACAE  420
HHLEEGEGIA GKALQSNHPF FINDVKAYDI YKYPLVHHAR KYGLNAAVAI RLRSTYTGDD  480
DYILEFFLPV NVKGSTEQQL LLNNLSGTMQ RICKSLRTVS DAELVGLGGA NTGFQKETSP  540
NIPQRNFQTT LSDSEMNSAE NVTFNVFNQR NGGIERVNPP KQAPSGSIRQ AEKKRSTAEK  600
NVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL  660
DSVQGVEGGL KYDPTTGGFV ATGSIIQEVD APKNLLFPAK NLLIENSEPV AQHPISMPSM  720
SYNNGESLTV KLEEDGNCVP TSHEKEVKTQ NIPFMPQGDS KPIAMDFGSC DPTNHGITPD  780
LKGSYLAKEV NKWGHIQNSL RLDNSDCHFV SQNSSFLVPA DEMDMGVHGD DGIVEYNQHS  840
SSSLTDSSND FGSTMQGYSS STQSFEEQKH PQVETSTAEN GSKIIVKATY KEDTIRFKFE  900
PSLGCLQLYE EVAKRLKLQN GTFQLKYLDD EEEWVMLVSD ADLQECLEIL DDIGKRCAKF  960
MVRDIPSGVG SSGSSNFLGF HIGPGAYNDN EFSCSLTMPR YDDRYGNTRL YVGRLSSRTR  1020
SRDLERLFNR YGRVRDVDMK REFAFVDFSD PRDADDARYS LDGREFDGSR LIVEFAKGTD  1080
SFFFVTLEKA PRGLREYLGR GPTPGSGRCF NCGIDGHWAR DCKAGDWKNK CYRCGERGHI  1140
ERQCKNSPKE LSRGRSRSPV GSRSRRGRSR SPSYSRSRSY SRSRSPARRG RSEDRYDRSR  1200
SPSYRKSPLP SKGGRKRSLT PDVDSPRGRR SPSPRNGRME MEKEGSDYSP REVSKPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.1	0.0	Nin-like family protein