PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP008936.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 524aa MW: 56856.6 Da PI: 6.4267

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP008936.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.1e-17	34	81	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l+++vk++G g+W+++ + g+ R++k+c++rw ++l PCP008936.1 34 KGPWTAAEDAILIEYVKKHGEGNWNAVQKNSGLARCGKSCRLRWANHL 81 79******************************************9986 PP
2	Myb_DNA-binding	47.7	3.5e-15	87	130	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+ ++eE++l++++++++G++ W++ a+ ++ gRt++++k++w++ PCP008936.1 87 KGSLSPEEEKLIIELHAKFGNK-WARMASQLP-GRTDNEIKNYWNT 130 57789***************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MMPNSGVLDG VHEVAVGAQR GGSHHHHHQR GLKKGPWTAA EDAILIEYVK KHGEGNWNAV 60 QKNSGLARCG KSCRLRWANH LRPNLKKGSL SPEEEKLIIE LHAKFGNKWA RMASQLPGRT 120 DNEIKNYWNT RMKRRQRAGL PVYPRDLQQE APAAAFQYHH QLRHSSSSSA SSFSSLLSSS 180 QPWEPNNFSP SQLSLYDHIT STFSSNSDHQ NPNNNYFLQN HHHISSSLYS NPMTQFHGNG 240 GFAMPLSPVS PFGSSSSSAL FNQSNIPNQA LIGQYSSHGG FGGYNNLSLS SMIMGTPTYD 300 PTPLVQGSKE LPSNQTLLSI NGLGEGQMGG SGYTAGDHYE IAPVPSQGNS GLLDDVLVEA 360 QNKSNKKAKS GNSCSSGWSS KEKGLMVEEE EEEGEESAEK EAEDTVQVES KSSGENSADN 420 QRDGSSSPSA IGMKQNEDPL EEMDDDLLSL LNFPSAPAVS ESWYVQGCMS NRASMSGVVT 480 SDNVSLEIQQ NAPLTPSVKT NTAAASEVKR SLGSCYWNNM PGIC

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MMPNSGVLDG VHEVAVGAQR GGSHHHHHQR GLKKGPWTAA EDAILIEYVK KHGEGNWNAV  60
QKNSGLARCG KSCRLRWANH LRPNLKKGSL SPEEEKLIIE LHAKFGNKWA RMASQLPGRT  120
DNEIKNYWNT RMKRRQRAGL PVYPRDLQQE APAAAFQYHH QLRHSSSSSA SSFSSLLSSS  180
QPWEPNNFSP SQLSLYDHIT STFSSNSDHQ NPNNNYFLQN HHHISSSLYS NPMTQFHGNG  240
GFAMPLSPVS PFGSSSSSAL FNQSNIPNQA LIGQYSSHGG FGGYNNLSLS SMIMGTPTYD  300
PTPLVQGSKE LPSNQTLLSI NGLGEGQMGG SGYTAGDHYE IAPVPSQGNS GLLDDVLVEA  360
QNKSNKKAKS GNSCSSGWSS KEKGLMVEEE EEEGEESAEK EAEDTVQVES KSSGENSADN  420
QRDGSSSPSA IGMKQNEDPL EEMDDDLLSL LNFPSAPAVS ESWYVQGCMS NRASMSGVVT  480
SDNVSLEIQQ NAPLTPSVKT NTAAASEVKR SLGSCYWNNM PGIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	2e-74	MYB family protein