PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP008708.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 536aa    MW: 59323.8 Da    PI: 4.8876
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP008708.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS436.22.5e-1331675362374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +e+L +cA+a++++d++ +++l++ l++++s +g+p+qRl ay +e+L arla+s+s+++++l+++e +   s+e l+++++++e++P++kf+++ aN
  PCP008708.1 167 TEVLCACAKALENNDMSTTEWLISDLRQMVSVSGEPIQRLGAYTLEGLIARLASSGSSICASLRCKEPA---SAELLSYMHMLYEICPYFKFGYMSAN 261
                  689*****************************************************************9...9************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                   aI ea++ e+rvHiiDf++ qG+QW++L+qaLa+Rp+gpp++RiTg+++++s   +   l  +g+rL+++Ae+++vpfef++ +    ++++le+L+
  PCP008708.1 262 GAIAEAMKDESRVHIIDFQVAQGTQWITLIQALAARPGGPPQIRITGIDDSASAyvRGGGLGVVGQRLSRLAESCKVPFEFHA-TGIFGSEVQLEDLE 358
                  **************************************************888899999************************.88899********* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++pgEa+aVn++++lh+++desvs++++rd++++l kslsPkvv++veqe+++n+++Fl rf+++l+y+ a+fds+++ lpre++eri+vE+++l+re
  PCP008708.1 359 IRPGEAIAVNFAFMLHHMPDESVSSHNHRDRLMRLAKSLSPKVVTLVEQESNTNTAPFLPRFIDTLSYFRAVFDSIDVALPREHRERINVEQHCLARE 456
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ivn++acegaer+er e l+kWr+r+ +aGF+p pls+++++++k+ll+ ++++ y++ee +g+l+lgW+++pLv+ +aWr
  PCP008708.1 457 IVNIIACEGAERVERYELLSKWRSRFIMAGFSPCPLSSFVNATIKTLLQGYSEK-YTLEEIDGALYLGWMNQPLVASCAWR 536
                  ****************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    
MQESYKHVIP NVSHPFGEQP VEEPESYCWP SFQNADHQAS DEVIQGTKLS VQRFEQHSTL  60
ESSSGTSAYP GRSSASSLNF SGNGSPASHP DLHSYQSGGS PVNQSCMSTD TDDLGHKIRE  120
LQNALLGNDS DAFDVYDIID EAGANQIYSE AEHREQIMLM ISRGDLTEVL CACAKALENN  180
DMSTTEWLIS DLRQMVSVSG EPIQRLGAYT LEGLIARLAS SGSSICASLR CKEPASAELL  240
SYMHMLYEIC PYFKFGYMSA NGAIAEAMKD ESRVHIIDFQ VAQGTQWITL IQALAARPGG  300
PPQIRITGID DSASAYVRGG GLGVVGQRLS RLAESCKVPF EFHATGIFGS EVQLEDLEIR  360
PGEAIAVNFA FMLHHMPDES VSSHNHRDRL MRLAKSLSPK VVTLVEQESN TNTAPFLPRF  420
IDTLSYFRAV FDSIDVALPR EHRERINVEQ HCLAREIVNI IACEGAERVE RYELLSKWRS  480
RFIMAGFSPC PLSSFVNATI KTLLQGYSEK YTLEEIDGAL YLGWMNQPLV ASCAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0GRAS family protein