PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP008565.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

E2F/DP

Protein Properties

Length: 486aa MW: 54179.5 Da PI: 7.8761

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP008565.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	83.8	1.4e-26	158	223	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r ++sL+llt+kf+kl+ ++++++++ln a+ L +v ++RRiYDi+NVLe++nl+ek++kn+irwkg PCP008565.1 158 RFDNSLGLLTKKFIKLIYEAKDRTLDLNRTAEVL---EV--QKRRIYDITNVLEGINLVEKTSKNHIRWKG 223 6799****************************...99..**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
METEDPNRLL RPSQFQFQLL RSHSQTQSHM SYQYSPLSPS QCLHPQSFPA LAPSRGSDRR 60 HLSGDASASL VTADARSALA KLSLRPKQEI DNDAQIGGQE AAAGPSKVMK GILPLPQSFT 120 GAKHNGKLKV PKHTKVGTQR STADFCNGLG PAQAIGCRFD NSLGLLTKKF IKLIYEAKDR 180 TLDLNRTAEV LEVQKRRIYD ITNVLEGINL VEKTSKNHIR WKGYDGPTPC ELDDHVSRLK 240 DEVESLYEEE CRLDDAIREK QELLRALEQD EKYSFLTEED ISSLHCFQNQ TLIAIKAPQA 300 SYIEVVDPDE DISFQQRQFR MIVKSTIGPI DVYLLSKYQC QLNSIAFKKA KLAGSSSCNR 360 SDYCNAEHGG ISSCHQGEKN TSETLSLPSS EASSGIQKII PSHFDASFSS MPMMIIGLDH 420 NLMLALQIYG RIRPGPKAKT SFKTVLRRVA QHWAMNIDRS VNGNQLLLES LDNVRQGCQL 480 DGCLTI

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

METEDPNRLL RPSQFQFQLL RSHSQTQSHM SYQYSPLSPS QCLHPQSFPA LAPSRGSDRR  60
HLSGDASASL VTADARSALA KLSLRPKQEI DNDAQIGGQE AAAGPSKVMK GILPLPQSFT  120
GAKHNGKLKV PKHTKVGTQR STADFCNGLG PAQAIGCRFD NSLGLLTKKF IKLIYEAKDR  180
TLDLNRTAEV LEVQKRRIYD ITNVLEGINL VEKTSKNHIR WKGYDGPTPC ELDDHVSRLK  240
DEVESLYEEE CRLDDAIREK QELLRALEQD EKYSFLTEED ISSLHCFQNQ TLIAIKAPQA  300
SYIEVVDPDE DISFQQRQFR MIVKSTIGPI DVYLLSKYQC QLNSIAFKKA KLAGSSSCNR  360
SDYCNAEHGG ISSCHQGEKN TSETLSLPSS EASSGIQKII PSHFDASFSS MPMMIIGLDH  420
NLMLALQIYG RIRPGPKAKT SFKTVLRRVA QHWAMNIDRS VNGNQLLLES LDNVRQGCQL  480
DGCLTI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G47870.2	3e-87	E2F/DP family protein