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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PCP008170.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 322aa MW: 34834.5 Da PI: 5.0599 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 62 | 1.2e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r
PCP008170.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQNYNVFDFLRDIVSR 86
5789**************************************************************************987 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 322 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNSLHLKHC VQNYNVFDFL RDIVSRVPDY GHGHSDAAAD DRTISKRRKP PGDECNDSDE 120 ELKRSKMLEI NHGSSSGRGR GRGRGRGRGR GRTAEKEISH HETESEPCTS LQQTIKPNPN 180 PGMVVDDVSE SKDALKENVT VPDETDPAVR NFDLNTDVND SEDTKAAATA AQAAATAAPA 240 ASQAAPAASQ SAPAASQSAP VASQVAPTAA QASSAGPIAE PKHEEYPGWS PADVNRMAID 300 PLQLANLSRR LDEDEEDYDE EG |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 138 | 147 | RGRGRGRGRG |
| 2 | 138 | 148 | RGRGRGRGRGR |
| 3 | 140 | 149 | RGRGRGRGRG |
| 4 | 140 | 150 | RGRGRGRGRGR |
| 5 | 142 | 151 | RGRGRGRGRG |
| 6 | 142 | 152 | RGRGRGRGRGR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 2e-75 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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