PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP007554.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 993aa    MW: 109480 Da    PI: 8.0088
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP007554.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.5e-24131232199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+ltpsd+++ g +++p+ +a+++         ++ +  +l+++d++g +We+++iyr++++r++lt+GW++Fv+ + L +gD+vvF+  ++ ++e
  PCP007554.1 131 FSKILTPSDANNGGGFSVPRFCADSIfpplnyqADPPVQ--MLSVTDLHGVVWEFRHIYRGTPRRHLLTTGWSKFVNHKMLVAGDSVVFM--RNGRGE 224
                  88*********************999****995444444..8************************************************..457899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  ++++v+r+
  PCP007554.1 225 MFIGVRRA 232
                  99***996 PP
2Auxin_resp88.41.3e-29279362183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  +a+ a+++ +FevvY+P+a++s+Fvvk+e vekalkv +++GmR+k+a+etedss+ ++ +Gt + +s  ++  W++S+Wr+L+
  PCP007554.1 279 VAEMAAEGRPFEVVYYPKAGWSDFVVKAEVVEKALKVFWTAGMRVKLAMETEDSSRMTWfQGTLSTTSVPENGPWQGSPWRMLQ 362
                  578899****************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 993 aa     Download sequence    
MPPPHQPHSH SHRRSIDPKI WRACAGNSVQ IPSLHSRVYY FPQGHLEQSS SSNSSSSAVL  60
LSPLLLSKPL ILCRISALHF LAVPTTDEVF AKLLLVPIPQ EFPNLEQRNG EEFDADDGGD  120
SERQDDKVVS FSKILTPSDA NNGGGFSVPR FCADSIFPPL NYQADPPVQM LSVTDLHGVV  180
WEFRHIYRGT PRRHLLTTGW SKFVNHKMLV AGDSVVFMRN GRGEMFIGVR RAVRSTASSD  240
CARLSSQIGG GVTYSTRPNT EDQDCSGRKV MSAEAVAEVA EMAAEGRPFE VVYYPKAGWS  300
DFVVKAEVVE KALKVFWTAG MRVKLAMETE DSSRMTWFQG TLSTTSVPEN GPWQGSPWRM  360
LQVTWDEPEV LQNTKRVSPW EVEFVGSAPS IHTTFYPTKR FRAPLSHGLL TNAEGEFFFP  420
MTGAANSAMV PFSASLLNYN NFPAGMQGAR QDTFCVSNLS HLLSENTPQM CTFNSIGKNE  480
GPKLKRVCTE LNIGSSQSDE LSPDSQSSVQ SFGKELDGNR SQTKVGRSSF QLFGKIIYMN  540
QPVEGCFDDV GCTEDSGNKG YNETEEGHNQ LDLSFTKLLD RIDVQCQRAS AVEALYRIGI  600
IVKCFVLNCL HLFLQLEALK AGRKLTTSLE CCSSEVFIVG FLMANSLFLP NHTLIAPPPR  660
RLSASVSSKP NKPQPPLLPC PPPPLGFINF SLTSNSSSSI INPSSGGTSS GGTSSSRRRA  720
ASSFKSRLAP QDSVPPTNSR KESSKSNAGP SGSWGDEEQL PSLKTLLKVY KEAIFNGDGK  780
TVSEVEAIIR VIENEKKELV EKVSSASAEI TSGKEKLIRL QADFDNCRKR FEKERLTVRT  840
DAQGEVIESL LPMVDNFERA RQYLKPETEK EKKIDASYQG IYKQFVEIMR SLHVAVVPTV  900
GKPFDPSVKM WKIEEIPGYQ SRGFDGSKFS LLHEAIAREE SQELKEGIII QEIRRGFLLG  960
GRLLRPATVK VSSGPGSKKS PVATEKTTAG VEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-165ARF family protein