PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP007352.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 556aa MW: 60149.5 Da PI: 7.0951

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP007352.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0013	39	59	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk Fs+ L H+r H PCP007352.1 39 CEVCGKGFSSGKALGGHLRIH 59 *******************99 PP
2	zf-C2H2	17.1	1.5e-05	113	134	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cgk F++ +L H+r+H PCP007352.1 113 VCCVCGKNFPSMKSLFGHMRSH 134 6********************9 PP
3	zf-C2H2	10.7	0.0016	383	405	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C k+F+++ L H+++H PCP007352.1 383 YKCNLCVKCFPSHQALGGHMSSH 405 9********************99 PP
4	zf-C2H2	14.4	0.00011	450	472	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k+F++ L H r+H PCP007352.1 450 HQCKICNKTFPTGQALGGHKRSH 472 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MENNNGGLFP KLKVAKPEPL DQNPQNSSAA PQPQFTRFCE VCGKGFSSGK ALGGHLRIHI 60 QADRELFNQS RKNMISSKAK ISKPNNSDVG SSNAGGVVGI GGNSNSISDM KPVCCVCGKN 120 FPSMKSLFGH MRSHPEREWR GIQPPPAAKN SSSSTLSDAV PDQSDKKAQD GQIDSDEMFF 180 GSKSSVLNLS KTLPKWSQTA RRGRKSGSTG LESNSDQSIS GLDSRSPRTV EEDEEQMKEA 240 VHDLLLLAQA NPLEGGGADD TMCSEATNSN FLITANQDGE GALPRHGYTA TTTVGSTNKR 300 KGSPSEVKRS EKKWYDEYGG GFGQEKSTVK NFLKLGLMEE ENIGNHNNME DELSDSQNSE 360 SIAVMRRNRR KMKLVDLEGR LRYKCNLCVK CFPSHQALGG HMSSHNKLKG IAVAHPSMED 420 QSAPADVSAG EDRVHNDEAE RVALNHQQHH QCKICNKTFP TGQALGGHKR SHWNGPTEQQ 480 QQQVVGGPPE QLQQQLQAQS SQNIAGVGGG RRVLDFDLNE LPPMEEDDQQ GEGAGYQYGG 540 AAAAGCAPSS YNSVTN

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MENNNGGLFP KLKVAKPEPL DQNPQNSSAA PQPQFTRFCE VCGKGFSSGK ALGGHLRIHI  60
QADRELFNQS RKNMISSKAK ISKPNNSDVG SSNAGGVVGI GGNSNSISDM KPVCCVCGKN  120
FPSMKSLFGH MRSHPEREWR GIQPPPAAKN SSSSTLSDAV PDQSDKKAQD GQIDSDEMFF  180
GSKSSVLNLS KTLPKWSQTA RRGRKSGSTG LESNSDQSIS GLDSRSPRTV EEDEEQMKEA  240
VHDLLLLAQA NPLEGGGADD TMCSEATNSN FLITANQDGE GALPRHGYTA TTTVGSTNKR  300
KGSPSEVKRS EKKWYDEYGG GFGQEKSTVK NFLKLGLMEE ENIGNHNNME DELSDSQNSE  360
SIAVMRRNRR KMKLVDLEGR LRYKCNLCVK CFPSHQALGG HMSSHNKLKG IAVAHPSMED  420
QSAPADVSAG EDRVHNDEAE RVALNHQQHH QCKICNKTFP TGQALGGHKR SHWNGPTEQQ  480
QQQVVGGPPE QLQQQLQAQS SQNIAGVGGG RRVLDFDLNE LPPMEEDDQQ GEGAGYQYGG  540
AAAAGCAPSS YNSVTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	2e-20	C2H2 family protein