PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP006689.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

M-type_MADS

Protein Properties

Length: 873aa MW: 98484.9 Da PI: 5.8423

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP006689.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71	1e-22	515	558	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e++ nrqvtfskRrngilKKA+ELS+LCd+++ +++fs+tg+ PCP006689.1 515 KLESSGNRQVTFSKRRNGILKKAKELSILCDVDIVLLMFSPTGR 558 67999*************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence
MDKAMSDGFG CSPASLLALL LVLIILNWLL VLHFNSNLRY LFLCFLCDVM QIKPVIQRSC 60 TDENVCYHKP SEGVEINSIT TSPDQVPSVQ AAEISYIHEN VADGEKNLCV GELGLVMETL 120 GTLSEGRLGS KEIADLFEED PSLEEVKEAF RVFDENEDGF IDAGELMKNL HVVSEHNVQL 180 QRSEIESTRT PIEPQYNEPP SSVRPTSKWN TVRFVAEWKK LENWAEVLWP RMVSMTTPQA 240 RSIGLPLMNL IKLKGIPILQ QLHLEEQLLR TSSHNWCIVN DGTNDPAIVM GVSGKPAELL 300 EIDLVLRDQI PVIRRFTGGG TVTVDQNTLF VTFICNKDGV PGLQPYPRPI MSWSSLVYSK 360 VFEGLADFQL RENDYVFGNR KFGGNAQSIS KNRWIHHTSF LWDYDVRNMA YLKHPKRVPE 420 YRLARDHLEF ICRMKDYIPR SIFLEKTVEA LGSQFSVRPE RSDAIEATSS TKFVPSTRLL 480 TRQELEEAAA FDSQAERNLS QSLSLMGRVK LKIKKLESSG NRQVTFSKRR NGILKKAKEL 540 SILCDVDIVL LMFSPTGRPT IFQGDRSNFE GIVSKFAQLT PQERAKRKLE SLEVLKKTFK 600 KLDHDVNVQD FMSSSSQTVQ DLTHQVTVLQ TQLTELHKKL SFWSDPDKVD NLEQLRQMED 660 MLKESINRTC LRKFQNGMPS SLLVGGGMQE AQPITWLFNS NNQHMIFPNE PNYLPHRGVE 720 CSTNATVPHY TSYFGTGTST SPSTSKQSEA GDPVQLDTMG QISNMEGGGG LNEFDINACL 780 STEPGKHYAY PSYCSSYVPD DQKLKHEMEK NVPANPVDYQ LSSNFELPTS LYETDQHAWL 840 SSSGPSGIAV YKENTYQPVS PSIDIFRSVS ASL

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence

MDKAMSDGFG CSPASLLALL LVLIILNWLL VLHFNSNLRY LFLCFLCDVM QIKPVIQRSC  60
TDENVCYHKP SEGVEINSIT TSPDQVPSVQ AAEISYIHEN VADGEKNLCV GELGLVMETL  120
GTLSEGRLGS KEIADLFEED PSLEEVKEAF RVFDENEDGF IDAGELMKNL HVVSEHNVQL  180
QRSEIESTRT PIEPQYNEPP SSVRPTSKWN TVRFVAEWKK LENWAEVLWP RMVSMTTPQA  240
RSIGLPLMNL IKLKGIPILQ QLHLEEQLLR TSSHNWCIVN DGTNDPAIVM GVSGKPAELL  300
EIDLVLRDQI PVIRRFTGGG TVTVDQNTLF VTFICNKDGV PGLQPYPRPI MSWSSLVYSK  360
VFEGLADFQL RENDYVFGNR KFGGNAQSIS KNRWIHHTSF LWDYDVRNMA YLKHPKRVPE  420
YRLARDHLEF ICRMKDYIPR SIFLEKTVEA LGSQFSVRPE RSDAIEATSS TKFVPSTRLL  480
TRQELEEAAA FDSQAERNLS QSLSLMGRVK LKIKKLESSG NRQVTFSKRR NGILKKAKEL  540
SILCDVDIVL LMFSPTGRPT IFQGDRSNFE GIVSKFAQLT PQERAKRKLE SLEVLKKTFK  600
KLDHDVNVQD FMSSSSQTVQ DLTHQVTVLQ TQLTELHKKL SFWSDPDKVD NLEQLRQMED  660
MLKESINRTC LRKFQNGMPS SLLVGGGMQE AQPITWLFNS NNQHMIFPNE PNYLPHRGVE  720
CSTNATVPHY TSYFGTGTST SPSTSKQSEA GDPVQLDTMG QISNMEGGGG LNEFDINACL  780
STEPGKHYAY PSYCSSYVPD DQKLKHEMEK NVPANPVDYQ LSSNFELPTS LYETDQHAWL  840
SSSGPSGIAV YKENTYQPVS PSIDIFRSVS ASL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	2e-70	M-type_MADS family protein