PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP006047.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 748aa    MW: 81634.5 Da    PI: 6.133
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP006047.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS316.65.5e-973897472374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +++L+++Ae +++g+  laq +Larl+++ sp g+p+ R+a+yf+eAL+  l+ ++    ++ ++s+ s+ + + ++ a+k fse+sP+++f+++t+N
  PCP006047.1 389 IDQLFNAAELIETGNPVLAQGILARLNHQLSPIGKPFSRAAFYFKEALQLLLHINT----SSNSSSALSPFSLIFKIGAYKSFSEISPVVQFANFTCN 482
                  689***********************************************999822....2233444444559************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  qaIleaveg +rvH+iDfdi++G+QW++++q+ a R++g+ sl+iT++ s++++++ e++ t+e+L++fA+el++ fe +++  ++l +   + L ++
  PCP006047.1 483 QAILEAVEGFNRVHVIDFDIGYGGQWASFMQEVALRNGGASSLKITAFISSSAHDEFEVSFTRENLKHFASELNLAFELELVSLESL-NSGSWGLPIH 579
                  **************************************************9*9***************************9744444.4458999999 PP

         GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                    + +a+ + l + ++ ++++ l+     +L++vk+lsP++vv  ++ +d+++ +F +++++al+ ys l++s++a    + ++ +k+Er ll++ i+
  PCP006047.1 580 ASDRVAIAVNLPIGSFSSNPLLLPL----ILRFVKQLSPRIVVSLDRGSDRTDVPFPHQIIQALHSYSGLLESIDAV-NVNPDALQKIERYLLQPGIE 672
                  9998888888888888866777666....*********************************************665.34668999************ PP

         GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++v+ ++ +     ++  +Wr+ + ++GF+p+++s+++++qa++l++++++ g++ve+++ slvl+W+++ L+s+SaWr
  PCP006047.1 673 KIVTGRHHS----PKRTPSWRALFLSSGFSPLTFSNFTESQAEYLVQRTPVGGFHVEKRQSSLVLCWQRKDLISASAWR 747
                  ***999888....99999************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    
MKAMPLPFEE FQGKGVLDFS FVSSSSAAAA ASDSFLSSPP QKWIHRHHSS KENCYVGSTE  60
PTSVLDTRRS PSPPTSSSTL SSSHGSGASG GSTDTTTAAG VENPSQTPLE EQKCGPSLGM  120
EDWESVLSES PGQEQSILRL IMSDIEDPSL GLNTLLQSSS GSDHHHQNLE FGCGGFQDVV  180
DQGGGYGGGF ERDDHSGGLV SPSLHASSGP DFNFSNNASN VETQSSNVRP NPTMFSASMS  240
NPFPVSLSSG MFQRQQNMGL EEKPQIFNPQ MVINQNQAES TQNPAMFMPL TYAQLQDHHL  300
LSPPPSKRLN SGGFGPGYPV QRAPFLNPGS ELLVQAQQQQ QQLQFLPQHL QHQRPTMPVA  360
KEKMMSPAEG GKEMMNQNHQ QPQLEQAVID QLFNAAELIE TGNPVLAQGI LARLNHQLSP  420
IGKPFSRAAF YFKEALQLLL HINTSSNSSS ALSPFSLIFK IGAYKSFSEI SPVVQFANFT  480
CNQAILEAVE GFNRVHVIDF DIGYGGQWAS FMQEVALRNG GASSLKITAF ISSSAHDEFE  540
VSFTRENLKH FASELNLAFE LELVSLESLN SGSWGLPIHA SDRVAIAVNL PIGSFSSNPL  600
LLPLILRFVK QLSPRIVVSL DRGSDRTDVP FPHQIIQALH SYSGLLESID AVNVNPDALQ  660
KIERYLLQPG IEKIVTGRHH SPKRTPSWRA LFLSSGFSPL TFSNFTESQA EYLVQRTPVG  720
GFHVEKRQSS LVLCWQRKDL ISASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-131GRAS family protein