PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005785.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 396aa MW: 45361.1 Da PI: 5.9794

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005785.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	79.4	8e-25	8	142	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk....kvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdkev 92 p+G++FhP+deelv +yL +v+g ++ e++i+e+d+y + e +d+ + + ++++++yfF+k + ++a tg+r r++ sg+Wk + ++v PCP005785.1 8 PVGYKFHPRDEELVEDYLYSQVRGAPFGDEHAIPEIDLYGSmEAKDIWNnnggQNLEKDEDLYFFTKLKPASAkgTGSRIARTIGSGTWKGENSGTKV 105 89**********************999899**965499999633444333467799988777633688********99999999 PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g+++g k + +y++++ + e+ W+mhe++l PCP005785.1 106 EDPkTGKTIGFLKRFQLYRNTKFRQESGCWIMHEFSL 142 99868899************9********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MAPSNNFPVG YKFHPRDEEL VEDYLYSQVR GAPFGDEHAI PEIDLYGSME AKDIWNNNGG 60 QNLEKDEDLY FFTKLKPASA KGTGSRIART IGSGTWKGEN SGTKVEDPKT GKTIGFLKRF 120 QLYRNTKFRQ ESGCWIMHEF SLDPKLVRHI KSSSTSRQNN DEYVICRIRK NYDRKRKADD 180 RDHNREEATR VVQSKRNKIQ RLSENIDESY VAPMSSEVNI DRYNQQQQQT NINATSTSSS 240 IAVTNVDQPK YSYHEPAQYY EVINQYDIPL QQEQTTTTID HANVTNLLTG LTEQQRYFVT 300 QERTVASSSL AMPDNQEQQM HLPQHYHDTQ EPMTPMTAMA RPFDFIAEAA CLSTLSQPNS 360 IADPTLASSL GMARQEDYLQ HNGFVNNAST DMPQYY

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MAPSNNFPVG YKFHPRDEEL VEDYLYSQVR GAPFGDEHAI PEIDLYGSME AKDIWNNNGG  60
QNLEKDEDLY FFTKLKPASA KGTGSRIART IGSGTWKGEN SGTKVEDPKT GKTIGFLKRF  120
QLYRNTKFRQ ESGCWIMHEF SLDPKLVRHI KSSSTSRQNN DEYVICRIRK NYDRKRKADD  180
RDHNREEATR VVQSKRNKIQ RLSENIDESY VAPMSSEVNI DRYNQQQQQT NINATSTSSS  240
IAVTNVDQPK YSYHEPAQYY EVINQYDIPL QQEQTTTTID HANVTNLLTG LTEQQRYFVT  300
QERTVASSSL AMPDNQEQQM HLPQHYHDTQ EPMTPMTAMA RPFDFIAEAA CLSTLSQPNS  360
IADPTLASSL GMARQEDYLQ HNGFVNNAST DMPQYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	6e-18	NAC family protein