PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004104.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Trihelix

Protein Properties

Length: 448aa MW: 51324.1 Da PI: 6.5117

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004104.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.8	1e-26	122	218	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+q+v++Li+a+++++e+ ++++ +kk++W++vsk+m+er +++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d + PCP004104.1 122 KWTDQMVKLLITAVSYIGEDTGSDCgsggrrkysvvQKKGKWKSVSKVMAERSYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDVI 218 7*******************99888999999999********************************************569999888887765 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MEGNLSQGGG GMVPGGASFG GLDLQGSMRG HHQTQHPHTI HHHLPHPHQG SLVHPSIPEG 60 FPLKMGTMHH CDQTISMVDY NKGERGKNSA SDEDEPSYAE DGADGHPEAS KGKKGSPWQR 120 VKWTDQMVKL LITAVSYIGE DTGSDCGSGG RRKYSVVQKK GKWKSVSKVM AERSYHVSPQ 180 QCEDKFNDLN KRYKKLNDML GRGTSCQVVE NPALLDVIEY LTEKEKDDVR KILSSKHLFY 240 EEMCSYHNGN RLHLPHDPAL QKSLQRALKR DDPDNDDLRR HHHDDLDEDD QDMENDEHDD 300 FEENNALRGD NRGIYISEDS VKRLRQGQGR EDFNFGSSLN SQDSNKSSYS HPQILPQPDM 360 NQVLPDGTKA VWLQKQWVES RSFQLEEQKL QIQVEMLELE KQRLKWQRFS KKRDHELEKL 420 RLENERMKLE NERMILELKQ KEMGAGCS

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MEGNLSQGGG GMVPGGASFG GLDLQGSMRG HHQTQHPHTI HHHLPHPHQG SLVHPSIPEG  60
FPLKMGTMHH CDQTISMVDY NKGERGKNSA SDEDEPSYAE DGADGHPEAS KGKKGSPWQR  120
VKWTDQMVKL LITAVSYIGE DTGSDCGSGG RRKYSVVQKK GKWKSVSKVM AERSYHVSPQ  180
QCEDKFNDLN KRYKKLNDML GRGTSCQVVE NPALLDVIEY LTEKEKDDVR KILSSKHLFY  240
EEMCSYHNGN RLHLPHDPAL QKSLQRALKR DDPDNDDLRR HHHDDLDEDD QDMENDEHDD  300
FEENNALRGD NRGIYISEDS VKRLRQGQGR EDFNFGSSLN SQDSNKSSYS HPQILPQPDM  360
NQVLPDGTKA VWLQKQWVES RSFQLEEQKL QIQVEMLELE KQRLKWQRFS KKRDHELEKL  420
RLENERMKLE NERMILELKQ KEMGAGCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	1e-120	Trihelix family protein