PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003538.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 1966aa MW: 219900 Da PI: 8.62

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003538.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.6	2.6e-07	849	885	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W+ E ++++da +++G++ W+++a+ + +R+ +++ PCP003538.1 849 QWSNGELQRFYDAYRKYGKD-WRKVAAAVR-NRSIEMVE 885 7***************99.*****.*98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1966 aa Download sequence
MGVGNQSGYD AHLVDSVSVL TGWERVEKPV VAKQEVEVVH PWPEWIELME RLVQQNYFDH 60 RSVDEDRVVQ DIGFDPSEAV FPAEEDARGI DFKDFKAVHT ACLNFGKDRF DIIRSLSRQD 120 IQVLVGFGCL STDKKVVFSS KLLRKHTHLD EGDVCSSCSL RNSCEIAYMI TNKEDEARTI 180 DIMRILLTYG FDPVNGSLVN KSLLKQKSVK TVVRKLLHHV VKLSAVPIDP NLPPPVIKKP 240 PPKVKQPPPP PRRRVLQDDI EMKKGDWLCS KCDFMNFAKN NICLQCDAKR PKRQLLPGEW 300 ECPGRNMAWF HCDCKRPPDE YLENKLQEVQ RGPRTRMEKT AVLHGDANAW NFNFDDNESD 360 GADVAAFEYA DSSVRDENSL GNQAQGQDFG HREYNLSKDS RVPRGNNEEY SEADTVRPGR 420 GFDDFDDDID NYELDTRNKT SAQDASIDFS EFEGSESEDV ENSDNSLQDF DKELSVHPNW 480 KSSHVADSRS RGRGRTTPGP SKRLSFGSDD ELGMSDDDLD QKFGARRGKS NNLDSKRKGF 540 ERRGNFDMED DSLSGSESDN GFQSHKNRPR RNKENNIKGR GGPNFTRETQ FESNGMKGGR 600 RNSFNDDFDG ATRGSRGNNR GFRGNDFAGM RMSNRGNDTR SFNSPKRAGF GNGRGRNSFN 660 DDFDRSARGS CREKDLESSS VEGLMNMGGT RTGALKNLET ADALLKDRSM FHDRNGSDWY 720 ALLMLHSWFM RQTVAAHTDG MECQRSKLES GRFPVYWQHV LDQMHHSFTS FNFSMYQKEV 780 SSYQKFSSVA MQDPRGCNLY VNFAMAPTRK AKGVKRYATV NEASPEKYGG GSNKKKQRKR 840 KLSDKLGLQW SNGELQRFYD AYRKYGKDWR KVAAAVRNRS IEMVEALYNM NRAYLSLPEG 900 TASVVGLKAM MTDHYNVMEG SDSERESNDD LGFSRKPQKR KLGKDQPSVL KDVLHAHPSA 960 SLEGCLSLLK RRKLDGDQPR AVGKRTPRVP ISYPHKKDDR EAYVSPIKKG RKSEGDNDDD 1020 IAHVAALLTE ASQRGGSPQV SQTPYGRPVH IKSSSVQSSG RMHPPPGKAR ANLRRASVDE 1080 DWLEGSLGSG GAETGDDAGD LLEGVGTVDM PSKGNKLYKK RGKVKHSGNH QFDDGGEACS 1140 GTEGLNVSSR AIDDSEVSNT KGEQPSPQGQ RKESKKLYFG DESSCLDALQ TLADLSLMMP 1200 ESMDSGSSVQ LKDEGANVDA EDKFSVPEAT STSQFRNKNK IPSVKHRVPY TISGVEGSNS 1260 KKSKLGRDPA VDMNTVSESE QQLLSTTKIL KRKRKSSIPK ISNADAHMDS DMNEPSKTEG 1320 CGEEENKPVT KGKRTNQIST PSKQWKSARS LEGSLNSDQR RTVTDLTGST AQAPTSSQVN 1380 LPTKQTSRRK MYIPRTLHPK EKSCEKKLKN QLITRSNSVQ DRALHLKEKI SCCLSSHLVR 1440 RWCTFEWFYS ALDYPWFAKR EFEEYLNHVG LGHIPRLTRV EWGVIRSSLG KPRRFSEHFL 1500 HEEREKLKQY RESVRKHYAE LRTGVREGLP TDLARPLSVG QQVIALHPKT REVHDGSVLT 1560 VDHDKCRVQF DRPDIGVEFV MDVDCMPLNP LDNMPEALRR QNIAFDKSFL TSKEANKNGN 1620 LNFGGPMMFP SSGHLVKATS PVNASIKQGK GDAIHTTAQP KTASADIGRA QQTAYSQPGM 1680 VVAHNQAREA DIRALSELNR ALDKKEALLV ELRNTNNNIL ENQNSGECSL KDSEPFKKHY 1740 ATFHAQVSSA LVNLRQRNTY PANSLPPWMK QPSNSTIYGG PSSFDSSISQ ESGSSVADIV 1800 EVSKSKAHMM VNAAIQAMAS RKCGEDAYVR IREALDSIDN QHFTSDSRLP ANRSQEQVNG 1860 SLGHRNQLSS GTSDPNLTSD SSAPKLHDAD KNEAQILSEL ISACVMAVHM IQTCTERQFP 1920 PAVVAQVLDY AVTSLHPRCP QNVGVYREIQ MCMGRIKTQI LALVPT

Sequence ? help Back to Top

Protein Sequence Length: 1966 aa Download sequence

MGVGNQSGYD AHLVDSVSVL TGWERVEKPV VAKQEVEVVH PWPEWIELME RLVQQNYFDH  60
RSVDEDRVVQ DIGFDPSEAV FPAEEDARGI DFKDFKAVHT ACLNFGKDRF DIIRSLSRQD  120
IQVLVGFGCL STDKKVVFSS KLLRKHTHLD EGDVCSSCSL RNSCEIAYMI TNKEDEARTI  180
DIMRILLTYG FDPVNGSLVN KSLLKQKSVK TVVRKLLHHV VKLSAVPIDP NLPPPVIKKP  240
PPKVKQPPPP PRRRVLQDDI EMKKGDWLCS KCDFMNFAKN NICLQCDAKR PKRQLLPGEW  300
ECPGRNMAWF HCDCKRPPDE YLENKLQEVQ RGPRTRMEKT AVLHGDANAW NFNFDDNESD  360
GADVAAFEYA DSSVRDENSL GNQAQGQDFG HREYNLSKDS RVPRGNNEEY SEADTVRPGR  420
GFDDFDDDID NYELDTRNKT SAQDASIDFS EFEGSESEDV ENSDNSLQDF DKELSVHPNW  480
KSSHVADSRS RGRGRTTPGP SKRLSFGSDD ELGMSDDDLD QKFGARRGKS NNLDSKRKGF  540
ERRGNFDMED DSLSGSESDN GFQSHKNRPR RNKENNIKGR GGPNFTRETQ FESNGMKGGR  600
RNSFNDDFDG ATRGSRGNNR GFRGNDFAGM RMSNRGNDTR SFNSPKRAGF GNGRGRNSFN  660
DDFDRSARGS CREKDLESSS VEGLMNMGGT RTGALKNLET ADALLKDRSM FHDRNGSDWY  720
ALLMLHSWFM RQTVAAHTDG MECQRSKLES GRFPVYWQHV LDQMHHSFTS FNFSMYQKEV  780
SSYQKFSSVA MQDPRGCNLY VNFAMAPTRK AKGVKRYATV NEASPEKYGG GSNKKKQRKR  840
KLSDKLGLQW SNGELQRFYD AYRKYGKDWR KVAAAVRNRS IEMVEALYNM NRAYLSLPEG  900
TASVVGLKAM MTDHYNVMEG SDSERESNDD LGFSRKPQKR KLGKDQPSVL KDVLHAHPSA  960
SLEGCLSLLK RRKLDGDQPR AVGKRTPRVP ISYPHKKDDR EAYVSPIKKG RKSEGDNDDD  1020
IAHVAALLTE ASQRGGSPQV SQTPYGRPVH IKSSSVQSSG RMHPPPGKAR ANLRRASVDE  1080
DWLEGSLGSG GAETGDDAGD LLEGVGTVDM PSKGNKLYKK RGKVKHSGNH QFDDGGEACS  1140
GTEGLNVSSR AIDDSEVSNT KGEQPSPQGQ RKESKKLYFG DESSCLDALQ TLADLSLMMP  1200
ESMDSGSSVQ LKDEGANVDA EDKFSVPEAT STSQFRNKNK IPSVKHRVPY TISGVEGSNS  1260
KKSKLGRDPA VDMNTVSESE QQLLSTTKIL KRKRKSSIPK ISNADAHMDS DMNEPSKTEG  1320
CGEEENKPVT KGKRTNQIST PSKQWKSARS LEGSLNSDQR RTVTDLTGST AQAPTSSQVN  1380
LPTKQTSRRK MYIPRTLHPK EKSCEKKLKN QLITRSNSVQ DRALHLKEKI SCCLSSHLVR  1440
RWCTFEWFYS ALDYPWFAKR EFEEYLNHVG LGHIPRLTRV EWGVIRSSLG KPRRFSEHFL  1500
HEEREKLKQY RESVRKHYAE LRTGVREGLP TDLARPLSVG QQVIALHPKT REVHDGSVLT  1560
VDHDKCRVQF DRPDIGVEFV MDVDCMPLNP LDNMPEALRR QNIAFDKSFL TSKEANKNGN  1620
LNFGGPMMFP SSGHLVKATS PVNASIKQGK GDAIHTTAQP KTASADIGRA QQTAYSQPGM  1680
VVAHNQAREA DIRALSELNR ALDKKEALLV ELRNTNNNIL ENQNSGECSL KDSEPFKKHY  1740
ATFHAQVSSA LVNLRQRNTY PANSLPPWMK QPSNSTIYGG PSSFDSSISQ ESGSSVADIV  1800
EVSKSKAHMM VNAAIQAMAS RKCGEDAYVR IREALDSIDN QHFTSDSRLP ANRSQEQVNG  1860
SLGHRNQLSS GTSDPNLTSD SSAPKLHDAD KNEAQILSEL ISACVMAVHM IQTCTERQFP  1920
PAVVAQVLDY AVTSLHPRCP QNVGVYREIQ MCMGRIKTQI LALVPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	834	842	KKKQRKRKL
2	835	843	KKKQRKRKL
3	935	943	KKKQRKRKL
4	970	1012	KRRKLDGDQPRAVGKRTPRVPISYPHKKDDREAYVSPIKKGRK
5	1388	1409	RRKMYIPRTLHPKEKSCEKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein