PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003492.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 529aa MW: 59658.6 Da PI: 7.3115

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003492.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.6	1.6e-14	237	283	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd lv++v ++G + W+ Ia+ + gR +kqc++rw+++l PCP003492.1 237 KGQWSPEEDRHLVQLVGRFGIKKWSHIANQLT-GRVGKQCRERWHNHL 283 799**************************9.***********97 PP
2	Myb_DNA-binding	51.6	2.1e-16	290	331	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W++eEd++l++a+k++G++ W+ a+ ++ gRt++ +k++w+ PCP003492.1 290 EVWSEEEDKILIEAHKKMGNR-WAEMAKILP-GRTENTIKNHWN 331 68*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MEYLETNLRE LDNFPLISTL LYGSSNPLKL MKPENPPPTT IKTTTTNGNL YSLSRSSPPP 60 PSSPKALFHH PNSINHGFNR VSHSHEYNLT PKTDHFTTTE AGSSSNPFSK ISTTCNTLNN 120 PFEPSPYTPN YHRHHFVTAD CGESELVAMH GFHGGVRGCL GYPPDHQEIP HDQQIGSESC 180 VQLPPLVIYG EFGSSSAPAM RLPSDDIPRL SADEKKSKRL CEGGAIKLLH KKPDIIKGQW 240 SPEEDRHLVQ LVGRFGIKKW SHIANQLTGR VGKQCRERWH NHLRPDIRKE VWSEEEDKIL 300 IEAHKKMGNR WAEMAKILPG RTENTIKNHW NATKRKQNSK RKSNKQDSSN NNYNESSMLQ 360 DYIRSVVSST TTGTPSTASA NSTGTMENKA VLSSVVSPDH QSGMHINQNN IVESPDATNS 420 VNWDLTGYRP EPFDSEASNM NNHMVDGVTT LSDFDKSNMF NIFESYGLGG YLQQRMASSS 480 TSRVKDPSCS MEYELPFFTL EIDNFMRGHD DHFKKELDSM EMLHFKRNM

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MEYLETNLRE LDNFPLISTL LYGSSNPLKL MKPENPPPTT IKTTTTNGNL YSLSRSSPPP  60
PSSPKALFHH PNSINHGFNR VSHSHEYNLT PKTDHFTTTE AGSSSNPFSK ISTTCNTLNN  120
PFEPSPYTPN YHRHHFVTAD CGESELVAMH GFHGGVRGCL GYPPDHQEIP HDQQIGSESC  180
VQLPPLVIYG EFGSSSAPAM RLPSDDIPRL SADEKKSKRL CEGGAIKLLH KKPDIIKGQW  240
SPEEDRHLVQ LVGRFGIKKW SHIANQLTGR VGKQCRERWH NHLRPDIRKE VWSEEEDKIL  300
IEAHKKMGNR WAEMAKILPG RTENTIKNHW NATKRKQNSK RKSNKQDSSN NNYNESSMLQ  360
DYIRSVVSST TTGTPSTASA NSTGTMENKA VLSSVVSPDH QSGMHINQNN IVESPDATNS  420
VNWDLTGYRP EPFDSEASNM NNHMVDGVTT LSDFDKSNMF NIFESYGLGG YLQQRMASSS  480
TSRVKDPSCS MEYELPFFTL EIDNFMRGHD DHFKKELDSM EMLHFKRNM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	9e-53	MYB family protein