PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002581.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 369aa MW: 40655.1 Da PI: 6.79

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002581.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.3	1.8e-15	159	207	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h + Er+RR+++N +++ L+ l+P++ +K++ a+i+ A+eYI++L PCP002581.1 159 KRTKHFATERQRRQQLNGKYDILKNLVPNP-----TKNDRASIVGDAIEYINEL 207 79**************************.....9*************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MVLLLLTCTL YPQPPDLLNL FSLPRCSPSS LLQNSSITFT NPLPKTSNFP SSFGLLGDLP 60 SAVDTPQGTP SSVLYDPLLH LNLPPQPPLF SELLQSLPHG YTLPGPGNGS LFSSGGDDRE 120 GSGGGVLYDP DGSLGRQFDS GVLKFSRDMA PNGIGRDLKR TKHFATERQR RQQLNGKYDI 180 LKNLVPNPTK NDRASIVGDA IEYINELLRT VEELKLLVEK KRCGREKIKR HRTEHDGAAA 240 AADDESCNIQ PLGEPHDQSY NNGSLRSSWL QRKSKDTEVD IRIVDDEVTI KLVQRKKINL 300 LLFVSRLLDE LQLDLHHVAG GHIGNSYSFF FNTKMYEGSC LYASAIAGKL IEVLDGQYAA 360 AVLPPTNSY

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MVLLLLTCTL YPQPPDLLNL FSLPRCSPSS LLQNSSITFT NPLPKTSNFP SSFGLLGDLP  60
SAVDTPQGTP SSVLYDPLLH LNLPPQPPLF SELLQSLPHG YTLPGPGNGS LFSSGGDDRE  120
GSGGGVLYDP DGSLGRQFDS GVLKFSRDMA PNGIGRDLKR TKHFATERQR RQQLNGKYDI  180
LKNLVPNPTK NDRASIVGDA IEYINELLRT VEELKLLVEK KRCGREKIKR HRTEHDGAAA  240
AADDESCNIQ PLGEPHDQSY NNGSLRSSWL QRKSKDTEVD IRIVDDEVTI KLVQRKKINL  300
LLFVSRLLDE LQLDLHHVAG GHIGNSYSFF FNTKMYEGSC LYASAIAGKL IEVLDGQYAA  360
AVLPPTNSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	171	KRTKHFATERQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	9e-79	bHLH family protein