PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001167.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 2054aa MW: 230975 Da PI: 5.9896

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001167.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.4	5.7e-39	1751	1851	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCaaCk++rrkC ++C+lapyfp +qpk f+n+hklFG+sn+lk+lk+l++ ++ +am+s++y+A++r + PvyG+ +vi+++q q+ +++el++ PCP001167.1 1751 ACAACKYQRRKCRAECPLAPYFPPDQPKMFQNAHKLFGVSNILKILKNLEPRQKLEAMRSIIYQANVRDKFPVYGCWEVIWQIQYQILVAEEELQA 1846 7*********************************************************************************************** PP DUF260 97 lkeel 101 ++++l PCP001167.1 1847 VHQQL 1851 *9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 2054 aa Download sequence
MGNKKRNAAP RPKQSPAAVQ PLPVADGDAV FSSQSDTTLA LVEAEPDALL LSNNKIESSP 60 LPMIESDGGA AKVECERALT ALRRGNHTKA LRLMKESCQR YENSAHSALI HRVQGTVCVK 120 VASIIDDPNS KQRHLRNAMD SARRAVELSP NSIEFAHFYA NLLYEAANDG KEYEEVVAEC 180 ERALAIEKPV DPARESLQEE SQQKISTADA RIGHVQNELR QLIQKSNIAS ISTWMKNLGN 240 GEEKFRLIPI RRATEDPMEV RLVQTRRPNE IKKATKTPEE RRKEIEVRVA AARLLQQKSD 300 VPQLGNEGEK SDRGLDSSSG SSQRGSERRK FGNLRKNGSS AERKDLVRSF WKSLTVDMKK 360 ELLKARVSDL KAKFSSSKDG LANEVISEAL TFAESNRSWK FWVCCRCNEK FVDCESHMHH 420 VVQEHVGNLI PKMQSVLPQK VENEWTEMLL SSSWKPLDAS SAVGMLTDQR KCKDPEVVED 480 FYSGNHNKDC DECFKDAWDS SPEKEMLGDS PSGCTVEGNN HKKLAHVECG ECEEDNGSIA 540 YSSVANGWPV SDDSEREKLL ERIHALFEVL IRHKYLAASH LNRVIQYTMD DLQASCSQLL 600 NLGVEQTPMC ICFLGATQLR KILKFLQDLS HACGLGRYSD KSSSPADDAN NANKGVEIKE 660 RIVLNGDASC LILDECLLSS ECTCDVGHHP VTDAAPVAVV GNENGVPPDS DALLSWIFAG 720 PTSGEQLTSW VHTKEEKTKQ GMEILQMLEK EFYHLQSLCE KKCEHLNYEE ALQAVEDLCI 780 EEGKKRESVT EFAHRSFESI LKKRREELLR RENDVMFLSN RTELDARSNV LKESEALNIN 840 QFGYEETYGG VTSQLCDLEL GEDDDRRAKD YVHQMDTCVE VAIQRRKEQL YVELSKIDAR 900 IMQNVTGMQQ MEVKLEHISA RDYRSILLPL VKSYLRAHLE DLAEKDATEK SDAAREAFLA 960 ELALDSKKGV RGGNDNLRHS QEKTKDKKKN KEFRKAKDSK GSGVSDEYYH HDETSELSFP 1020 GASDSAFPDS ELVISLNGND LKQLEEECKR RIELEEEERK LEETLKFQRQ IEKEAKQKHL 1080 AEQNKKSTQL HPEKVVEGPH DVNLEPCANG QDVNEPFKRS VQEQLAQKTG FTNNLEGVPV 1140 NLANGSAVPV NSPTVSSAHQ AKVNQDLPNG GILEDDGHLP SDRRTGRKNR RQRSSTKVLD 1200 GKSQGLSSGK ENVEVGRSSV EGSNDNLLTN NSKFCKSFMV STVSTLVSMI DYFDNNGTKD 1260 LRQQRAEEVD EERFQADLKK AVRQSLDTFQ ERQKFPVVSN LRMARRISPD VDSGVLHNDI 1320 VNENANETDI FGTGLKNEVG EYNCFLNVII QSLWHIRLFR DELLRRSTSK HVHVGSPCVV 1380 CALYEIFTAL SNASADTRRE AVAPTSLRIA LSNLYPESNF FQEAQMNDAS EVLVVIFDCL 1440 HRSFTPGSSV SDAESVESGC PGSWDCSNNA CIVHSIFGMD IFERMNCYNC GLESRHLKYT 1500 SFFHNINASA LRTMKVMCAE SSYDELLNHV EMNHQLACDS EAGGCGKLNH IHHILSTPPH 1560 VFTTVLGWQK TCESADDIKA TLAALNTEID ISVLYRGLDP KTTHNLVSVV CYYGQHYHCF 1620 AYSHDGGCWI MYDDKTVKVI GGWVDVLNMC ERGHLQPQNF CGSSWSLTKN RVSKEFHHRR 1680 AEKSKLLVRL PSNSLQHNQV TVLQLSFKVG LFDEEGSNNY YGLSGRMSVL YAVSISGFDY 1740 QLVLRGTTSQ ACAACKYQRR KCRAECPLAP YFPPDQPKMF QNAHKLFGVS NILKILKNLE 1800 PRQKLEAMRS IIYQANVRDK FPVYGCWEVI WQIQYQILVA EEELQAVHQQ LAVYRQHHQH 1860 QHQILSMPEY VTSHLELGMA PPNNPLPLFN HNPPPYNHNN NNNATAVAPI DQHQQQSYSN 1920 SSDAAYSSAA YNIDSKDNVI NNNTNNNNND AGNQMWISNP FMTNNSNNNN NNSEAIQSEL 1980 GVLQPLSIQP EVVQDYDELH PFFDTIDDRQ SYIDSKEAYD SSSEESFKDT TRSMEHAENA 2040 LKNAAACFSL TSVN

Sequence ? help Back to Top

Protein Sequence Length: 2054 aa Download sequence

MGNKKRNAAP RPKQSPAAVQ PLPVADGDAV FSSQSDTTLA LVEAEPDALL LSNNKIESSP  60
LPMIESDGGA AKVECERALT ALRRGNHTKA LRLMKESCQR YENSAHSALI HRVQGTVCVK  120
VASIIDDPNS KQRHLRNAMD SARRAVELSP NSIEFAHFYA NLLYEAANDG KEYEEVVAEC  180
ERALAIEKPV DPARESLQEE SQQKISTADA RIGHVQNELR QLIQKSNIAS ISTWMKNLGN  240
GEEKFRLIPI RRATEDPMEV RLVQTRRPNE IKKATKTPEE RRKEIEVRVA AARLLQQKSD  300
VPQLGNEGEK SDRGLDSSSG SSQRGSERRK FGNLRKNGSS AERKDLVRSF WKSLTVDMKK  360
ELLKARVSDL KAKFSSSKDG LANEVISEAL TFAESNRSWK FWVCCRCNEK FVDCESHMHH  420
VVQEHVGNLI PKMQSVLPQK VENEWTEMLL SSSWKPLDAS SAVGMLTDQR KCKDPEVVED  480
FYSGNHNKDC DECFKDAWDS SPEKEMLGDS PSGCTVEGNN HKKLAHVECG ECEEDNGSIA  540
YSSVANGWPV SDDSEREKLL ERIHALFEVL IRHKYLAASH LNRVIQYTMD DLQASCSQLL  600
NLGVEQTPMC ICFLGATQLR KILKFLQDLS HACGLGRYSD KSSSPADDAN NANKGVEIKE  660
RIVLNGDASC LILDECLLSS ECTCDVGHHP VTDAAPVAVV GNENGVPPDS DALLSWIFAG  720
PTSGEQLTSW VHTKEEKTKQ GMEILQMLEK EFYHLQSLCE KKCEHLNYEE ALQAVEDLCI  780
EEGKKRESVT EFAHRSFESI LKKRREELLR RENDVMFLSN RTELDARSNV LKESEALNIN  840
QFGYEETYGG VTSQLCDLEL GEDDDRRAKD YVHQMDTCVE VAIQRRKEQL YVELSKIDAR  900
IMQNVTGMQQ MEVKLEHISA RDYRSILLPL VKSYLRAHLE DLAEKDATEK SDAAREAFLA  960
ELALDSKKGV RGGNDNLRHS QEKTKDKKKN KEFRKAKDSK GSGVSDEYYH HDETSELSFP  1020
GASDSAFPDS ELVISLNGND LKQLEEECKR RIELEEEERK LEETLKFQRQ IEKEAKQKHL  1080
AEQNKKSTQL HPEKVVEGPH DVNLEPCANG QDVNEPFKRS VQEQLAQKTG FTNNLEGVPV  1140
NLANGSAVPV NSPTVSSAHQ AKVNQDLPNG GILEDDGHLP SDRRTGRKNR RQRSSTKVLD  1200
GKSQGLSSGK ENVEVGRSSV EGSNDNLLTN NSKFCKSFMV STVSTLVSMI DYFDNNGTKD  1260
LRQQRAEEVD EERFQADLKK AVRQSLDTFQ ERQKFPVVSN LRMARRISPD VDSGVLHNDI  1320
VNENANETDI FGTGLKNEVG EYNCFLNVII QSLWHIRLFR DELLRRSTSK HVHVGSPCVV  1380
CALYEIFTAL SNASADTRRE AVAPTSLRIA LSNLYPESNF FQEAQMNDAS EVLVVIFDCL  1440
HRSFTPGSSV SDAESVESGC PGSWDCSNNA CIVHSIFGMD IFERMNCYNC GLESRHLKYT  1500
SFFHNINASA LRTMKVMCAE SSYDELLNHV EMNHQLACDS EAGGCGKLNH IHHILSTPPH  1560
VFTTVLGWQK TCESADDIKA TLAALNTEID ISVLYRGLDP KTTHNLVSVV CYYGQHYHCF  1620
AYSHDGGCWI MYDDKTVKVI GGWVDVLNMC ERGHLQPQNF CGSSWSLTKN RVSKEFHHRR  1680
AEKSKLLVRL PSNSLQHNQV TVLQLSFKVG LFDEEGSNNY YGLSGRMSVL YAVSISGFDY  1740
QLVLRGTTSQ ACAACKYQRR KCRAECPLAP YFPPDQPKMF QNAHKLFGVS NILKILKNLE  1800
PRQKLEAMRS IIYQANVRDK FPVYGCWEVI WQIQYQILVA EEELQAVHQQ LAVYRQHHQH  1860
QHQILSMPEY VTSHLELGMA PPNNPLPLFN HNPPPYNHNN NNNATAVAPI DQHQQQSYSN  1920
SSDAAYSSAA YNIDSKDNVI NNNTNNNNND AGNQMWISNP FMTNNSNNNN NNSEAIQSEL  1980
GVLQPLSIQP EVVQDYDELH PFFDTIDDRQ SYIDSKEAYD SSSEESFKDT TRSMEHAENA  2040
LKNAAACFSL TSVN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	784	805	KKRESVTEFAHRSFESILKKRR
2	1187	1193	RKNRRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-44	LBD family protein