PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP001087.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 474aa    MW: 52819.9 Da    PI: 6.1497
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP001087.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS465.82.5e-142494711374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cA++v++g+le+a+a+L+++s+las dgd+mqR+aayfteALa r+++ +++l  al++++ s   +see+ ++k+f+e+ P+lk++ +++
  PCP001087.1  49 LIHLLLTCANHVATGSLENANAALEQISQLASADGDTMQRIAAYFTEALADRILKAWPGLHTALNSTKIS--LVSEEILVRKVFFEMLPFLKVAVVLT 144
                  689*************************************************************999997..7************************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaI+ea+ege++vHiiD+++ +++QW+aLlq L++Rpegpp+lRiTgv++    +k+ l ++++rL+++Ae+l++pf+f + ++++le+l++++Lrv
  PCP001087.1 145 NQAIMEAMEGEKMVHIIDLSAAEPAQWIALLQVLSARPEGPPHLRITGVHQ----QKDVLDQMAHRLTEVAEKLDIPFQFCP-IVSKLENLDMDKLRV 237
                  ***************************************************....9**************************.7999*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll......................................................desvsles..erdevLklvkslsPkv 238
                  k+gEala+++vlqlh+ll                                                      ++++sl+   + d++L+++++l Pkv
  PCP001087.1 238 KTGEALAISSVLQLHSLLasddellkrksplaskgsngnhlpralqmsqgtlgellekemgnryspspdstsSSPLSLTPsaKLDSFLNAFWDLTPKV 335
                  ********************************************************************999855555544457899************ PP

         GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                  +v++eq+++hn++++++r+leal+ y++lfd+le+++pr+s er kvE++l+g+ei+n++aceg+er+erhe+lekW +rl+ aGF++vpls++ + q
  PCP001087.1 336 MVITEQDSNHNGSTLMQRLLEALYSYATLFDCLESTMPRTSLERLKVEKMLFGEEIKNIIACEGSERIERHEKLEKWIQRLDLAGFGNVPLSYYGMLQ 433
                  ************************************************************************************************** PP

         GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ak++l+ ++ +gyr+ ee+g+++  W+drpL+svSaWr
  PCP001087.1 434 AKRMLQGYGCNGYRMREENGCVLVSWQDRPLFSVSAWR 471
                  *************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    
MTPMFQDEGS SSAPSSPLQF FSTMSLSPSL GSPYPCLKEL KSEERGLYLI HLLLTCANHV  60
ATGSLENANA ALEQISQLAS ADGDTMQRIA AYFTEALADR ILKAWPGLHT ALNSTKISLV  120
SEEILVRKVF FEMLPFLKVA VVLTNQAIME AMEGEKMVHI IDLSAAEPAQ WIALLQVLSA  180
RPEGPPHLRI TGVHQQKDVL DQMAHRLTEV AEKLDIPFQF CPIVSKLENL DMDKLRVKTG  240
EALAISSVLQ LHSLLASDDE LLKRKSPLAS KGSNGNHLPR ALQMSQGTLG ELLEKEMGNR  300
YSPSPDSTSS SPLSLTPSAK LDSFLNAFWD LTPKVMVITE QDSNHNGSTL MQRLLEALYS  360
YATLFDCLES TMPRTSLERL KVEKMLFGEE IKNIIACEGS ERIERHEKLE KWIQRLDLAG  420
FGNVPLSYYG MLQAKRMLQG YGCNGYRMRE ENGCVLVSWQ DRPLFSVSAW RCRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein