PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000980.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

E2F/DP

Protein Properties

Length: 875aa MW: 98927.5 Da PI: 9.5314

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000980.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	70	2.8e-22	537	602	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++f+ l+++ + + l+++a++L v +rRRiYDi+NVLe+++++++k+kn+++wkg PCP000980.1 537 RKQKSLGLLCSNFIVLYNRDGVTSIGLDDAASRL---GV--ERRRIYDIVNVLESVGVLARKAKNQYSWKG 602 79***************999********.....****************************98 PP
2	E2F_TDP	77.4	1.4e-24	670	750	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL lltq+f+kl+ +s+ ++++l+e+ak L+ + +++k+RRiYDi+NVL+++nliek ++k++++w g PCP000980.1 670 RREKSLALLTQNFVKLFVCSTVETISLDEAAKLLLGDahnasMMRTKVRRIYDIANVLSSMNLIEKthtsdTRKPAFKWLG 750 689************************************999*********************999*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence
MLTLQLKTAA QKNPQPSFLI PCRSFTTSPS HPSQDSHLAN LILKSDPQTL TQILHSPQID 60 WTSDLVDKTL KRLWNHGPKA LQFFRILDHH PNYTHSCSSF DHAVDIAGRL RDYKSLWTLV 120 ARMRARRLGP GPRTFAIITE RYVAAGKPDR AVKVFLSMHE HGCPQDLNSF NTILDVLCKA 180 KRVEKAYNLF KVFRGRFKAD CVSYNIIANG WCLIKRTPKA LELLGEMVER GLDPSLTTFN 240 IMLKGYFRAG QIKEAWEFFL QMKKRKCEID VVTYTTLVHG FGVVGEIKKA RKVFDEMVGE 300 GVLPSVATYN ALIQVLCKKD SVENAVVVFE EMVSKGYVPN VTTYNVLIRG LCHSGNMDRA 360 LEFIDRMKGD ECEPNVQTYN VVIRYFCDAG EIEKALNVFE KMGCGDCLPN LDTYNVLISA 420 MFVRKKPEDL LVAGKLLIEM VDRGFLPRRF TFNRVLDGLL LTATTAPKGF LFLLKFQHLM 480 FSYRHVLKVY RLEDQYLRFP PFFLSTMTAP PPPPPATEQP PDPASTGPSA RNHRYSRKQK 540 SLGLLCSNFI VLYNRDGVTS IGLDDAASRL GVERRRIYDI VNVLESVGVL ARKAKNQYSW 600 KGFKAIPNAL QQLREEGLRE NICNFDGNED PNGYQISDDE DDAERCGSQQ NENNNPTLNL 660 KPMNPKSDNR REKSLALLTQ NFVKLFVCST VETISLDEAA KLLLGDAHNA SMMRTKVRRI 720 YDIANVLSSM NLIEKTHTSD TRKPAFKWLG LRGKEEVPQE TKKRAFGTDI TNVSSKRGKV 780 DSSIGGKLDG QKQKGLVGQA DRSNLEDSKD GSKTYQFGPF APVTIARAGT ENTRKVHDWE 840 KLTSTYCPQY QNQGPGDNSG RKRREVDRER NMTGD

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence

MLTLQLKTAA QKNPQPSFLI PCRSFTTSPS HPSQDSHLAN LILKSDPQTL TQILHSPQID  60
WTSDLVDKTL KRLWNHGPKA LQFFRILDHH PNYTHSCSSF DHAVDIAGRL RDYKSLWTLV  120
ARMRARRLGP GPRTFAIITE RYVAAGKPDR AVKVFLSMHE HGCPQDLNSF NTILDVLCKA  180
KRVEKAYNLF KVFRGRFKAD CVSYNIIANG WCLIKRTPKA LELLGEMVER GLDPSLTTFN  240
IMLKGYFRAG QIKEAWEFFL QMKKRKCEID VVTYTTLVHG FGVVGEIKKA RKVFDEMVGE  300
GVLPSVATYN ALIQVLCKKD SVENAVVVFE EMVSKGYVPN VTTYNVLIRG LCHSGNMDRA  360
LEFIDRMKGD ECEPNVQTYN VVIRYFCDAG EIEKALNVFE KMGCGDCLPN LDTYNVLISA  420
MFVRKKPEDL LVAGKLLIEM VDRGFLPRRF TFNRVLDGLL LTATTAPKGF LFLLKFQHLM  480
FSYRHVLKVY RLEDQYLRFP PFFLSTMTAP PPPPPATEQP PDPASTGPSA RNHRYSRKQK  540
SLGLLCSNFI VLYNRDGVTS IGLDDAASRL GVERRRIYDI VNVLESVGVL ARKAKNQYSW  600
KGFKAIPNAL QQLREEGLRE NICNFDGNED PNGYQISDDE DDAERCGSQQ NENNNPTLNL  660
KPMNPKSDNR REKSLALLTQ NFVKLFVCST VETISLDEAA KLLLGDAHNA SMMRTKVRRI  720
YDIANVLSSM NLIEKTHTSD TRKPAFKWLG LRGKEEVPQE TKKRAFGTDI TNVSSKRGKV  780
DSSIGGKLDG QKQKGLVGQA DRSNLEDSKD GSKTYQFGPF APVTIARAGT ENTRKVHDWE  840
KLTSTYCPQY QNQGPGDNSG RKRREVDRER NMTGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.1	1e-111	E2F/DP family protein