PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP000708.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 375aa MW: 42102.9 Da PI: 8.7287

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP000708.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.6	5.1e-39	123	262	2	130
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssasnsss 87 ++kkd+hski T++g+RdRRvRls+++ ++fFdLqd+LGfd++skt+eWLl+++ +ai +l s ss sec PCP000708.1 123 PAKKDQHSKIFTAQGLRDRRVRLSIDVSRQFFDLQDRLGFDTASKTLEWLLNKSRKAIRDLRTRknnlscsserskSLSSTSEC-------------- 206 78*********************************************************99956555544433322233444.............. PP TCP 88 g..............kaaksaakskksqksaasalnlakesrakarararertrekm 130 + +++k+ k +++++a +akesraka+ararer r k+ PCP000708.1 207 KdvvsdinevdnhvvSKEKEMVMMKLKESESA-GAYVAKESRAKAKARARERARAKK 262 12333333444455444444444444444444.68999***********766553 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MFSSSSCNSN TVSPQPNFPF SSTNYHPHPP PPPPPPPCVN LVTCTGDILF HHIHDSLSGQ 60 FSHQNISLMA PSAHQTLTYL GVSSNTVPPS INAPVSSSCG DLHHHQYSNY DLHSSRQDVV 120 VAPAKKDQHS KIFTAQGLRD RRVRLSIDVS RQFFDLQDRL GFDTASKTLE WLLNKSRKAI 180 RDLRTRKNNL SCSSERSKSL SSTSECKDVV SDINEVDNHV VSKEKEMVMM KLKESESAGA 240 YVAKESRAKA KARARERARA KKVCITSRRP QQILNQMNLF NEQLNDHETN ISSSSKVNFG 300 DHHVNQELGS LLDNQAHHHH CQEEDQSALI KRNKMKLFSS VVSNYNTTDQ SSSNSYLQFT 360 NSSQYWDING AFPMP

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MFSSSSCNSN TVSPQPNFPF SSTNYHPHPP PPPPPPPCVN LVTCTGDILF HHIHDSLSGQ  60
FSHQNISLMA PSAHQTLTYL GVSSNTVPPS INAPVSSSCG DLHHHQYSNY DLHSSRQDVV  120
VAPAKKDQHS KIFTAQGLRD RRVRLSIDVS RQFFDLQDRL GFDTASKTLE WLLNKSRKAI  180
RDLRTRKNNL SCSSERSKSL SSTSECKDVV SDINEVDNHV VSKEKEMVMM KLKESESAGA  240
YVAKESRAKA KARARERARA KKVCITSRRP QQILNQMNLF NEQLNDHETN ISSSSKVNFG  300
DHHVNQELGS LLDNQAHHHH CQEEDQSALI KRNKMKLFSS VVSNYNTTDQ SSSNSYLQFT  360
NSSQYWDING AFPMP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	9e-27	TCP family protein