PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu060328.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

LSD

Protein Properties

Length: 261aa MW: 27387.8 Da PI: 8.9184

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu060328.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37.9	2.9e-12	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrt+L YPrGA +V+C+lC +V Oeu060328.1 7 CSGCRTVLLYPRGAANVCCSLCKAV 31 ***********************98 PP
2	zf-LSD1	40.1	5.9e-13	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ rGA+sVRC++C+tV Oeu060328.1 46 CGGCRTLLMHARGATSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	47.2	3.7e-15	84	107	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ Oeu060328.1 84 CGNCRTTLMYPAGAPSVKCAICHY 107 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MQGQLVCSGC RTVLLYPRGA ANVCCSLCKA VTSVPPPGME MAQLICGGCR TLLMHARGAT 60 SVRCSCCHTV NLVPAPNHVA HVSCGNCRTT LMYPAGAPSV KCAICHYITN VNAYNTISDT 120 RVPAPVHGPG GNPPSASTPS TSTVTNLHNQ TVVVQNPMSV DESGKLVSNV VVGVTTCPSL 180 AGLNPGPLAP GPSVTSGGKS QVVPLLVPRF PHGFYSFPKG TLLHSYYITK LLQPFLWLLH 240 HLAAPTRNRT PHTWFQSPTT *

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	1e-57	LSD family protein