PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu056616.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C2H2

Protein Properties

Length: 395aa MW: 43824.4 Da PI: 5.9169

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu056616.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.7	2.5e-07	164	185	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Oeu056616.1 164 FCEICGKGFKRDANLRMHMRAH 185 6*******************99 PP
2	zf-C2H2	11.2	0.0011	249	272	1	23
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs s+Lk+H++ + Oeu056616.1 249 YSCTRCNkKSFSVVSDLKSHLKHC 272 99*******************977 PP
3	zf-C2H2	12	0.00063	280	296	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrk+ L H+ Oeu056616.1 280 TCGTSFSRKDKLFGHMA 296 6**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MSFFNDLRHT PAATKPPGAT TFSAAEVGGA NSKIPLMNLS IVQNRMDSLQ KFLFDSVNSN 60 TLLDQAKMNI VSSEIESAIQ QTIVNGAALL SSSTAFPVYT IPEENDKLKS WVLSETPDPE 120 PGKFLATGKE LADAKVEIHI DDDSDEFEIV ELDAVELLAE HVHFCEICGK GFKRDANLRM 180 HMRAHGNQFK TLEALAKPEK AVDSTSRRTR FSCPFAGCNR NKQHKKFRPL KSATCVKNHF 240 KRNHCPKMYS CTRCNKKSFS VVSDLKSHLK HCGEIKWKCT CGTSFSRKDK LFGHMALFEG 300 HMPAVLDEGD EGKEKGVAAL VEDEEDEEIN VKEEEINAKN VEMATNGGSN NNNIIFEGIL 360 DGIDSTDNYW FQDVFNSPNA ISSFGSGMDV FFNF*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MSFFNDLRHT PAATKPPGAT TFSAAEVGGA NSKIPLMNLS IVQNRMDSLQ KFLFDSVNSN  60
TLLDQAKMNI VSSEIESAIQ QTIVNGAALL SSSTAFPVYT IPEENDKLKS WVLSETPDPE  120
PGKFLATGKE LADAKVEIHI DDDSDEFEIV ELDAVELLAE HVHFCEICGK GFKRDANLRM  180
HMRAHGNQFK TLEALAKPEK AVDSTSRRTR FSCPFAGCNR NKQHKKFRPL KSATCVKNHF  240
KRNHCPKMYS CTRCNKKSFS VVSDLKSHLK HCGEIKWKCT CGTSFSRKDK LFGHMALFEG  300
HMPAVLDEGD EGKEKGVAAL VEDEEDEEIN VKEEEINAKN VEMATNGGSN NNNIIFEGIL  360
DGIDSTDNYW FQDVFNSPNA ISSFGSGMDV FFNF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	4e-76	C2H2 family protein