PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oeu042033.1
Organism
Olea europaea var. sylvestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
Family RAV
Protein Properties Length: 352aa    MW: 39360.2 Da    PI: 9.0112
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oeu042033.1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.4e-1462110155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s++kGV   + +grW A+I++      ++r++lg+f  +eeAa+a++ a+++++g
  Oeu042033.1  62 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDIAAQRFRG 110
                  689***9788.8*********3.....5*************************98 PP
2B3101.45e-32195294196
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k+ tpsdv+k++rlv+pk++ae++    +g++ ++  l +ed+ g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++   + +l++
  Oeu042033.1 195 FEKAVTPSDVGKLNRLVIPKQHAEKNfplqSGNNSKGLLLNFEDLGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGPDNQLYI 292
                  89****************************77778999*************************************************87667777777 PP

                  EE CS
           B3  95 kv 96 
                   +
  Oeu042033.1 293 DW 294
                  66 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MDTSCIDEST TSDSVSMTPI SVASTLPVTK SPESLCRVGS GTSVIIDAEV GVEAESRKLP  60
SSRFKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEEEAARA YDIAAQRFRG RDAVTNFKPL  120
SESEEDDVET AFLNSRSKAE IVDMLRKHTY SDELEQGRKN YGLLDGSGRR FTNKDGVFSS  180
FGGSDRAAKA REQLFEKAVT PSDVGKLNRL VIPKQHAEKN FPLQSGNNSK GLLLNFEDLG  240
GKVWRFRYSY WNSSQSYVLT KGWSRFVKEK NLKAGDIVSF QRSTGPDNQL YIDWKPRNGS  300
NITQPIPMVR LFGVNIFEVP SNESFSSGKR MREMELLALE CSKKQRVIDA L*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-149RAV family protein