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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oeu035607.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea
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Family | LBD | ||||||||
Protein Properties | Length: 248aa MW: 25632.2 Da PI: 7.3804 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.3 | 3e-39 | 30 | 130 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkCa +C+++pyf +eq +++fa+vhk+FGasnv+kll+++ ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael +l Oeu035607.1 30 PCGACKFLRRKCAVGCIFSPYFDSEQgAAHFAAVHKVFGASNVSKLLQHIAANKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELTYL 127 7***********************9989********************************************************************99 PP DUF260 98 kee 100 +++ Oeu035607.1 128 QAH 130 876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
MSVNPSGNNN GCGGSSSGSS GGTGGGGGGP CGACKFLRRK CAVGCIFSPY FDSEQGAAHF 60 AAVHKVFGAS NVSKLLQHIA ANKRLDAVVT ICYEAQARLR DPVYGCVAHI FALQQQVVNL 120 QAELTYLQAH LAALELPTPL PPPPPLPSLS QPLLVPPATL SILDLPTGPP TYDLSSLFDP 180 IMTMPPRQID RRLFGATRGP PEISSSSRGG GGGGDLQELA CELLYRGEPP TVSCSETSSL 240 PPHSKGN* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 7e-64 | LBD family protein |