PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu025932.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C2H2

Protein Properties

Length: 402aa MW: 44099.8 Da PI: 9.0608

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu025932.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.5e-05	112	132	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cg+ F ++ +L H+r+H Oeu025932.1 112 CKICGRGFLTNKSLFGHMRSH 132 ********************9 PP
2	zf-C2H2	17.3	1.3e-05	302	324	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ CgksF+++ L H ++H Oeu025932.1 302 YICSSCGKSFTTPQALGGHRSSH 324 89**************9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MEDDQNSDGA ETVAPTGGSA DKPLPVKIKF PNVKERMDED NMKDGPKVKD HCCVVCKRSF 60 SSGKALGGHI SSAHAQTNRD FSLKKLKPKK KRRPKQLVGF GSPSGYGGKN ICKICGRGFL 120 TNKSLFGHMR SHPDREWRGM EPPAEAARKF SEHEFEAMNK VPLLVLDPDQ IDSGPVVTSE 180 AIGLNKTVKW LVIGKRGRAP AKPVNESPPF PNSKEILAVQ QLIRLVNGDS TKPSEDLNSK 240 VKEDYSPDMF DEPHKQGTNG SMIIKNRTTE EKKSVDQELP PNFSPIGPAT KSVLPAVTPD 300 KYICSSCGKS FTTPQALGGH RSSHKKFKVK IYNTIDDQSS NEASYAFGVQ NQCHSTGECN 360 RADHVTPTDK AKKEHKVFEF DLNERLNQDD EGGMEPGNKA S*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MEDDQNSDGA ETVAPTGGSA DKPLPVKIKF PNVKERMDED NMKDGPKVKD HCCVVCKRSF  60
SSGKALGGHI SSAHAQTNRD FSLKKLKPKK KRRPKQLVGF GSPSGYGGKN ICKICGRGFL  120
TNKSLFGHMR SHPDREWRGM EPPAEAARKF SEHEFEAMNK VPLLVLDPDQ IDSGPVVTSE  180
AIGLNKTVKW LVIGKRGRAP AKPVNESPPF PNSKEILAVQ QLIRLVNGDS TKPSEDLNSK  240
VKEDYSPDMF DEPHKQGTNG SMIIKNRTTE EKKSVDQELP PNFSPIGPAT KSVLPAVTPD  300
KYICSSCGKS FTTPQALGGH RSSHKKFKVK IYNTIDDQSS NEASYAFGVQ NQCHSTGECN  360
RADHVTPTDK AKKEHKVFEF DLNERLNQDD EGGMEPGNKA S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	94	PKKKRRP
2	89	93	KKKRR
3	89	94	KKKRRP
4	89	96	KKKRRPKQ
5	90	95	KKRRPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	4e-17	C2H2 family protein