PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oeu010242.1

Organism

Olea europaea var. sylvestris

Taxonomic ID

158386

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Oleaceae; Oleeae; Olea; Olea europaea; Olea europaea subsp. europaea

Family

C2H2

Protein Properties

Length: 456aa MW: 50668.7 Da PI: 5.1278

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oeu010242.1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.0009	9	31	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ks+ + +L H+r+H Oeu010242.1 9 HVCKICSKSCVSGKSLGGHMRVH 31 79*******************99 PP
2	zf-C2H2	14.3	0.00012	122	141	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F++ L H+r Oeu010242.1 122 TCKECGKVFPSLRALSGHMR 141 6******************8 PP
3	zf-C2H2	13.5	0.00021	155	175	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F + L H+++H Oeu010242.1 155 CKECGKGFDSMRALFGHMKSH 175 ********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MEEVQEQRHV CKICSKSCVS GKSLGGHMRV HSAFISAMKR AAEVEFDSQM DLEGGDDQEG 60 SFQNSKNQSN SKFLDQEKIK NCGTNIGLGD DDPKNSYELR ENPKKSWKNF DTKHGDTPRD 120 GTCKECGKVF PSLRALSGHM RCHSIKKTTE NQNHCKECGK GFDSMRALFG HMKSHSNKSR 180 RVTDESPEGS SDLGNLCPLR RKRSKILYKI DPTPSSSGVE FGEVEEVALC LLMLSRGVKN 240 WDRSNSITES TGNDSAYFRD ESVCKDKEIE MNDGGDSSFD GDKVYKMDKA VGKLDPHVLD 300 SQIEMKVDSE ISEDDVLKFS CCDTTIVGGH DPKMLTDFDE KFDLKMLGGI SSVEVDTCSL 360 SVAEANSKIE CNVIASFQCP ICLRIFSSGQ ALGGHKRAHY TEFTGKKTIE SVAMDGDLDL 420 NLPLPIDESE NDGVKISQWW FETWHEPKEE PIITD*

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MEEVQEQRHV CKICSKSCVS GKSLGGHMRV HSAFISAMKR AAEVEFDSQM DLEGGDDQEG  60
SFQNSKNQSN SKFLDQEKIK NCGTNIGLGD DDPKNSYELR ENPKKSWKNF DTKHGDTPRD  120
GTCKECGKVF PSLRALSGHM RCHSIKKTTE NQNHCKECGK GFDSMRALFG HMKSHSNKSR  180
RVTDESPEGS SDLGNLCPLR RKRSKILYKI DPTPSSSGVE FGEVEEVALC LLMLSRGVKN  240
WDRSNSITES TGNDSAYFRD ESVCKDKEIE MNDGGDSSFD GDKVYKMDKA VGKLDPHVLD  300
SQIEMKVDSE ISEDDVLKFS CCDTTIVGGH DPKMLTDFDE KFDLKMLGGI SSVEVDTCSL  360
SVAEANSKIE CNVIASFQCP ICLRIFSSGQ ALGGHKRAHY TEFTGKKTIE SVAMDGDLDL  420
NLPLPIDESE NDGVKISQWW FETWHEPKEE PIITD*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26590.1	5e-19	C2H2 family protein