PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM91602.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C3H
Protein Properties Length: 382aa    MW: 41431.5 Da    PI: 8.486
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM91602.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.67e-067396226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                k++lCr++a  G C  Gd+C + H+
  OWM91602.1 73 KERLCRHWAS-GNCVKGDKCLYQHS 96
                89********.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    
MPADQRRYRR VGTGSKVCSY WLAGRCTKNA CRFLHGELPL QQNAYHGEVK PSSLFKGGGP  60
SKILKGKDGL KRKERLCRHW ASGNCVKGDK CLYQHSWSCG HSFGLLAKLE GHKKGIAGIG  120
FPSGSDKLST GSKDETVKIW DCHTGQCSDT VSVGSEVGSL ISEGPWVFVG LQSAVKAWNL  180
ECCTAFDLKA SSGLVYSMAV GSDLLFAGCQ NGDILVWRGS SPTNPLLLVA TLKGHTHAVL  240
SLVVGANRLY SASMDRTIRV WDIHTLECIT TLKGHANVVM TIKVWAVTSP GGRNLQVVYT  300
HNEDHGVLAL KGMHDMEGKP MLLTACDDDT VHLYELPTIY ARREVLALQV APAAGLFFTG  360
DETGTLNVWK WSGEPKQACS DP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-123C3H family protein