PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM91303.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 243aa MW: 27077.3 Da PI: 8.7006 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.5 | 3.6e-18 | 13 | 50 | 5 | 42 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 + r vtf kR+ng+lKKA+E S+LC+++ +vii+++ OWM91303.1 13 KEKSRRVTFQKRKNGLLKKAKEFSILCGVDTCVIIYGT 50 567799******************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MGRGRLALEL IGKEKSRRVT FQKRKNGLLK KAKEFSILCG VDTCVIIYGT PVISDRPHVP 60 EIWPPNPDGV ARIINRYKNE VGTGRRSAKI RGAVVGLDEY FLERQRKLGT ELAKARTSAC 120 DDLIAHLSEE EEVILLKTLL GHKLEGAKKR LEAMKSEKEL AALLLLQDQS NNIVPTPLMV 180 GSSLLSESDH RGLIFHQPMP TYSFYVPADA AGLYCRHDPK PSDDQMLLPT LFQYAANDNP 240 DAC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 2e-17 | M-type_MADS family protein |