PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM91238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | LSD | ||||||||
Protein Properties | Length: 596aa MW: 66833.3 Da PI: 4.0404 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 37.1 | 5e-12 | 504 | 528 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsY rGA++V+C++C+tV OWM91238.1 504 CGSCRRLLSYIRGARYVQCSCCQTV 528 ************************9 PP | |||||||
2 | zf-LSD1 | 42.8 | 8.5e-14 | 542 | 566 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C++C +lL+YP+GApsV+C++C++V OWM91238.1 542 CSSCAVLLMYPYGAPSVKCSSCHFV 566 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence |
MEITEEVRAM IEGDEAVEQR LREGIGSEEL VEEENGGNQC KQSAKERQVE DGIQREELAE 60 EVEMNNKYES NGVVEQVRSG IEGTESIDEK INNGKNSNGV VNEVRSVVEG EESVEEEING 120 NESNGVVEEV RDRTESNESV ERPVERMETD EAMEEGDKKR MKADRAAEED EGRTKSSGLE 180 EEKKERIGSA ELAEDNEERI AIGEAVDGER GQRESNELVE EEREAVESEE LVGEEEEERM 240 ETDEVVAEER GRMENNALAE EGRERIEPVE AVEDERTERI DPHEPMQEER RERVEHDESM 300 EELRDKVECE VMVQQERVME ATIEPREEEG LQSGSLVAPL PQSTNPPLST IEVAVKQEEQ 360 VEALEEKVKD EEQDNVEGMA MKEAARVENQ MELKVEPQEE EGEEGLPPGF HSGESSPCSK 420 KVTVKEEVVG KEDVKMKVEE VDGDEEDEGP PPGYQLPPTQ ADVLPPAAKS ISPPQPPSSQ 480 QLRPPMAEAP RPPAPAYEMA QMVCGSCRRL LSYIRGARYV QCSCCQTVNF VLEEHQVGQV 540 KCSSCAVLLM YPYGAPSVKC SSCHFVTEIG VCYLFFYCTT NLEFSCAPTH SERGRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 2e-32 | LSD family protein |