PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM91064.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C3H
Protein Properties Length: 391aa    MW: 43173.1 Da    PI: 8.0467
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM91064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.3e-08133153526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C+ ++r G C++Gd+C F+Hg
  OWM91064.1 133 VCSEYRR-GSCSRGDNCEFSHG 153
                 7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    
MGSVCAEQHK FHHLFSPKNK AGLDIPPRKL LSRRTAAAAP SSPAPASPNA DMFLDSPRGF  60
EKFLPYNTSG GGGSDSDDSD SDPYSSDNFR MYDFKVRRCN RSRSHDWTDC PFAHPGEKAR  120
RRDPRRYHYS GTVCSEYRRG SCSRGDNCEF SHGVFECWLH PSRYRTEACK DGKNCKRKVC  180
FFAHSQRELR ILPLQADNSP EDPTDRSKYR GLASLGQHHL SCLFCHHSSA VNSSPTSTLM  240
GLSHVSSPAV SPSQSLSPPL SPMKHRSSLG NISPVSHYGD RLTDLLSYKD VLNEIMGSLD  300
VMKVSDVPSS DLRHKRNVPW VDVSFPGDDQ TQFILSPAAP SPASAPGDSF RFADGRLGFL  360
DDSYKVSKNN AGDGLVAASD PDLGWVNELL M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.17e-66C3H family protein