PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OWM90439.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 267aa MW: 30566.4 Da PI: 4.316 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 2e-19 | 40 | 93 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe+++++ e++ +LA+ lgL+ rqV +WFqNrRa++k OWM90439.1 40 KKRRLTADQVRFLERSFEEENKLEPERKVQLAEDLGLQPRQVVIWFQNRRARWK 93 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.2 | 7.2e-41 | 39 | 131 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+++qv++LE+sFeee+kLeperKv+la++Lglqprqv +WFqnrRAR+ktkqlEkd+e+L+++y++l++e e+L +e+ +Lr+e+++ OWM90439.1 39 EKKRRLTADQVRFLERSFEEENKLEPERKVQLAEDLGLQPRQVVIWFQNRRARWKTKQLEKDFEVLQSSYKSLAAEYETLLEEKGKLRAEVHS 131 69**************************************************************************************99975 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 267 aa Download sequence |
MLSFEDAKGG NGSKRPFFRS FDYEEIADED LEEYFQQPEK KRRLTADQVR FLERSFEEEN 60 KLEPERKVQL AEDLGLQPRQ VVIWFQNRRA RWKTKQLEKD FEVLQSSYKS LAAEYETLLE 120 EKGKLRAEVH SLKEKLEVKD GETESSELSA KLSQEPPQNP GMDSASDGEV SKTPTLSSKQ 180 EDICSAKSDI FDSESPHYAD GSYSSLLDPS DSSYAFEPDQ SDLSQDEDDK LSKNSLVTAN 240 IFPKLEDSNS CNFGFSGLDH AFWSWSY |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 88 | 96 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01470.1 | 4e-45 | HD-ZIP family protein |