PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM90389.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 506aa MW: 55566.4 Da PI: 8.2213

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM90389.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00086	76	97	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C Cg+ F ++ L H+++ H OWM90389.1 76 CRECGRKFGSWKGLFGHMMKrH 97 99*****************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence
MKERRDDESE EVKHECKLCS KSFPCGRSLG GHMKSHLKDS AAAGYGYGLR KNPKKMGWRA 60 SEFTGGDDPS SVPPCCRECG RKFGSWKGLF GHMMKRHLVN NSDRLKEDEE EEEGFDCLNS 120 QFWGRDSSNT VTDSQSSDNQ AGFPNRKKRS QQRKRHNTTK VLNSSSSSDH VADIEQELEE 180 VAVCLMMLSR DFFNGSSGTG IIDSSMVDSS DNNSVSVFLK DPTRNENKDC HSPPKGSNAR 240 TELSVSWNFK NQSKVNQEDI ISQSGIENPE SGKNLDGMDK NQVKPCKVRS STSKRKFSDV 300 SDDSRPRKSS SKRLLAPDGS EEGGNGDLDK GINSRFECNT CNKIFQSYQA LGGHRASHRK 360 AKAGSGSKDN SIETEQSPPG EVITAEGTEI ETANPSSKRK RKKEAKGDEH ECPVCLRVFP 420 SGQALGGHKR SHMPEAKNSQ TRLPAIPKPA AHKVRDFLDL NLPAPLEEEE EGGGGGGGTN 480 SSIVSFKPWW GGRSHKQEPA IGLIAN

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence

MKERRDDESE EVKHECKLCS KSFPCGRSLG GHMKSHLKDS AAAGYGYGLR KNPKKMGWRA  60
SEFTGGDDPS SVPPCCRECG RKFGSWKGLF GHMMKRHLVN NSDRLKEDEE EEEGFDCLNS  120
QFWGRDSSNT VTDSQSSDNQ AGFPNRKKRS QQRKRHNTTK VLNSSSSSDH VADIEQELEE  180
VAVCLMMLSR DFFNGSSGTG IIDSSMVDSS DNNSVSVFLK DPTRNENKDC HSPPKGSNAR  240
TELSVSWNFK NQSKVNQEDI ISQSGIENPE SGKNLDGMDK NQVKPCKVRS STSKRKFSDV  300
SDDSRPRKSS SKRLLAPDGS EEGGNGDLDK GINSRFECNT CNKIFQSYQA LGGHRASHRK  360
AKAGSGSKDN SIETEQSPPG EVITAEGTEI ETANPSSKRK RKKEAKGDEH ECPVCLRVFP  420
SGQALGGHKR SHMPEAKNSQ TRLPAIPKPA AHKVRDFLDL NLPAPLEEEE EGGGGGGGTN  480
SSIVSFKPWW GGRSHKQEPA IGLIAN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	399	403	RKRKK
2	399	404	RKRKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	3e-23	C2H2 family protein