PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM90369.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

TCP

Protein Properties

Length: 344aa MW: 38384.3 Da PI: 9.3972

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM90369.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	90.1	4.9e-28	50	130	3	66
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................s 66 g+kdrhsk++T +g+RdRR+Rls+++a +++dLqd+LG+ ++sk i+WL+ + k++i++l+ + + OWM90369.1 50 GGKDRHSKVCTVRGLRDRRIRLSVPTAVQLYDLQDKLGVSQPSKVIDWLIDATKHEIDKLPPLqmppgfggfplvspdllG 130 79************************************************************9455444444444444441 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MNASSREKCD FWAKEERDQH PDRLSLVPSS SRRWSAFRNP RIVRVSRALG GKDRHSKVCT 60 VRGLRDRRIR LSVPTAVQLY DLQDKLGVSQ PSKVIDWLID ATKHEIDKLP PLQMPPGFGG 120 FPLVSPDLLG ASRSSLAPFF DAGSSTSTLL KHGLINPLFS SKNNININDN LEGEDMASRS 180 KYWDVNDVMR AKGKEVESRE FHLEKAKFDE PNIPARLNFL PLPSLSSHTI SLSHQLGTQL 240 GFMRQSDHQN HFTGDGSSNI ASSLSLSSNI HHHNPSYFTT STPIIFPPYN NAPTNPLVAE 300 SNFQLFSSGS MPPLHLFGSS TRPILGEYVK FLCQENKTEN PPSI

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MNASSREKCD FWAKEERDQH PDRLSLVPSS SRRWSAFRNP RIVRVSRALG GKDRHSKVCT  60
VRGLRDRRIR LSVPTAVQLY DLQDKLGVSQ PSKVIDWLID ATKHEIDKLP PLQMPPGFGG  120
FPLVSPDLLG ASRSSLAPFF DAGSSTSTLL KHGLINPLFS SKNNININDN LEGEDMASRS  180
KYWDVNDVMR AKGKEVESRE FHLEKAKFDE PNIPARLNFL PLPSLSSHTI SLSHQLGTQL  240
GFMRQSDHQN HFTGDGSSNI ASSLSLSSNI HHHNPSYFTT STPIIFPPYN NAPTNPLVAE  300
SNFQLFSSGS MPPLHLFGSS TRPILGEYVK FLCQENKTEN PPSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	1e-46	TCP family protein