PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM90198.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

ARF

Protein Properties

Length: 568aa MW: 61585.4 Da PI: 5.8892

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM90198.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.4	2.6e-23	116	217	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f kvlt+sd+++ g +++p+ +a+++ +++++ + l ++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+v+F+ ++s++ ++ OWM90198.1 116 FAKVLTSSDANNGGGFSVPRFCADTIfpplnyQIDPPV-QNLEVTDVHGVVWTFRHIYRGTPRRHLLTTGWSKFVNNKKLVAGDSVLFM--KNSGGDMF 211 89****************99999999555554.379999****************************************..779* PP EEEE-S CS B3 94 vkvfrk 99 v+++r+ OWM90198.1 212 VGIRRA 217 **97 PP
2	Auxin_resp	83.4	5e-28	265	348	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a+ +++Fev+Y+Pra++s+Fvv+++ ve+++k+ +++G R+kma+eted s+ ++ +Gtv+++ ++ W +S+Wr+++ OWM90198.1 265 AIEHAARGMPFEVIYYPRAGWSDFVVRADVVEASMKSYLAAGVRVKMAVETEDTSRMTWfQGTVSSTAMPENGPWAGSPWRMVQ 348 5678999**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence
MSSSTSSPDF PPVDSRIWRA CAGSSVRIPA VNSRVYYFPQ GHLEQSSSAS SPVLSPIALS 60 RPYVACVVAA VSFHADPLTD EVFARLVLHP SSSGGEALPE ARGYAVDEED EKIASFAKVL 120 TSSDANNGGG FSVPRFCADT IFPPLNYQID PPVQNLEVTD VHGVVWTFRH IYRGTPRRHL 180 LTTGWSKFVN NKKLVAGDSV LFMKNSGGDM FVGIRRATRV PGADCFTWRN QIAAGKTKIE 240 EDSVLKESFS RNGRGRVPLE SVVKAIEHAA RGMPFEVIYY PRAGWSDFVV RADVVEASMK 300 SYLAAGVRVK MAVETEDTSR MTWFQGTVSS TAMPENGPWA GSPWRMVQVI WDEPDVLPNS 360 RSLNPWQLEP LSIQSAFPPT KKFRASGLGP DGGDAELYFP LRGFASSTLG HLSPSLLNYN 420 ISPAGMQGAR QDAIGASSFL HYADENTPPK MFTADFLGNK MFPNYKSLPT GLNIESSPSE 480 NLSTDSPNSG RSSIADLAAQ KVPANCIQLF GQFIYIEKPV ESGSDDDGLK ESIGTANAGQ 540 SLANPLVKLI ERLDNQQEGA SAVESCLI

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence

MSSSTSSPDF PPVDSRIWRA CAGSSVRIPA VNSRVYYFPQ GHLEQSSSAS SPVLSPIALS  60
RPYVACVVAA VSFHADPLTD EVFARLVLHP SSSGGEALPE ARGYAVDEED EKIASFAKVL  120
TSSDANNGGG FSVPRFCADT IFPPLNYQID PPVQNLEVTD VHGVVWTFRH IYRGTPRRHL  180
LTTGWSKFVN NKKLVAGDSV LFMKNSGGDM FVGIRRATRV PGADCFTWRN QIAAGKTKIE  240
EDSVLKESFS RNGRGRVPLE SVVKAIEHAA RGMPFEVIYY PRAGWSDFVV RADVVEASMK  300
SYLAAGVRVK MAVETEDTSR MTWFQGTVSS TAMPENGPWA GSPWRMVQVI WDEPDVLPNS  360
RSLNPWQLEP LSIQSAFPPT KKFRASGLGP DGGDAELYFP LRGFASSTLG HLSPSLLNYN  420
ISPAGMQGAR QDAIGASSFL HYADENTPPK MFTADFLGNK MFPNYKSLPT GLNIESSPSE  480
NLSTDSPNSG RSSIADLAAQ KVPANCIQLF GQFIYIEKPV ESGSDDDGLK ESIGTANAGQ  540
SLANPLVKLI ERLDNQQEGA SAVESCLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	1e-168	ARF family protein