PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM89655.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | YABBY | ||||||||
Protein Properties | Length: 162aa MW: 17991.4 Da PI: 8.5019 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 194.4 | 5.2e-60 | 7 | 160 | 3 | 159 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleel.kveeenlksnvekeesastsv 96 +f+ se++CyvqC+fC+til+vsvPs+s ++vvtvrCGhC+sllsvn++kas +lla+ sh +e+ ++ + ++++ + ++ +++s+s + OWM89655.1 7 LFEFSEKICYVQCGFCTTILLVSVPSSSQSMVVTVRCGHCSSLLSVNMMKASfiplHLLASLSH------DEVEAKAeHPTDQAGTRKNPERRSPSVVT 99 57889********************************************999777777888887......22222220223333333333444444444 PP YABBY 97 sseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 s+ s+nede++ v + v++PPekrqr+Psaynrfikeei+r+ka+nP+++h+eafs aakn OWM89655.1 100 SN---SDNEDEDLISVNRtVNKPPEKRQRAPSAYNRFIKEEIRRLKAQNPNMAHKEAFSQAAKN 160 44...67777777666655********************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence |
MGSINPLFEF SEKICYVQCG FCTTILLVSV PSSSQSMVVT VRCGHCSSLL SVNMMKASFI 60 PLHLLASLSH DEVEAKAEHP TDQAGTRKNP ERRSPSVVTS NSDNEDEDLI SVNRTVNKPP 120 EKRQRAPSAY NRFIKEEIRR LKAQNPNMAH KEAFSQAAKN VS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 2e-56 | YABBY family protein |